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Report for CCDS34948.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34948.1 Public Homo sapiens 8 SLC45A4 24 110 108 CCDS HistoryNCBI Gene:57210Re-query CCDS DB by CCDS ID:34948.1Re-query CCDS DB by GeneID:57210See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34948.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000024061.7 ENSP00000024061.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000024061.7Link to Ensembl Protein Viewer:ENSP00000024061.3Re-query CCDS DB by Nucleotide ID:ENST00000024061Re-query CCDS DB by Protein ID:ENSP00000024061
Original member Current member NCBI NM_001080431.3 NP_001073900.1 Accepted alive Link to Nucleotide Sequence:NM_001080431.3Link to Protein Sequence:NP_001073900.1Re-query CCDS DB by Nucleotide ID:NM_001080431Re-query CCDS DB by Protein ID:NP_001073900Link to BLAST:NP_001073900.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073900.1 798 Q5BKX6-3 798 100% 0 0

Chromosomal Locations for CCDS 34948.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 141211442 141211697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141212204 141212556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141215759 141215970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141217090 141217189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141218011 141219029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141219650 141219829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141221577 141221765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 141228179 141228266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2397 nt):
ATGGGGAAAGCAAGCCCAGCCTCAGGGCTGTCCCGTCCAAAGACCCTTGTGAGTCCACTGAGGTCAAATC
AATGGAGTCTTCAGAAAGGCCTTCCGGAGCAGTACTACAGCCTCACCTGGTTCCTGAGCCCCATCCTTGG
CCTCATCTTCACACCTCTCATTGGGTCTGCGAGTGACCGGTGCACCCTGAGCTGGGGCCGCCGGCGGCCC
TTCATCCTCGCCCTCTGCGTTGGCGTCCTCTTTGGCGTTGCACTTTTCCTTAACGGCTCTGCCATCGGTC
TGGCCCTCGGCGATGTCCCCAACCGGCAGCCCATTGGCATCGTGCTCACGGTGCTGGGAGTGGTGGTCCT
GGACTTCAGCGCCGATGCCACCGAGGGGCCCATCCGTGCCTATCTGCTGGACGTGGTGGACAGCGAGGAG
CAGGACATGGCCCTCAACATCCACGCCTTCTCTGCCGGCCTCGGCGGAGCCATCGGCTACGTGCTGGGTG
GGCTGGACTGGACCCAGACCTTCCTGGGCAGCTGGTTCCGGACCCAGAACCAGGTGCTCTTCTTCTTTGC
CGCCATCATCTTCACGGTGTCCGTGGCCCTGCACCTGTTCAGCATCGACGAGGAGCAGTACAGCCCGCAG
CAGGAGCGCAGCGCTGAGGAGCCCGGCGCCCTGGATGGGGGCGAGCCGCACGGCGTCCCTGCCTTCCCAG
ACGAGGTACAGTCGGAGCACGAGCTGGCCCTGGACTACCCGGACGTGGACATCATGCGCAGCAAAAGCGA
CTCGGCATTGCACGTGCCGGACACCGCGCTGGACCTGGAGCCCGAGCTGCTGTTCCTGCACGACATCGAG
CCCTCCATCTTCCACGACGCCTCCTACCCCGCCACCCCCCGCAGCACCAGCCAGGAGCTCGCCAAGACCA
AGCTGCCCCGCCTGGCCACCTTCCTCAAGGAAGCCGCCAAGGAGGACGAGACCTTGCTGGATAATCACTT
GAATGAAGCTAAAGTCCCAAACGGAAGTGGCTCCCCCACAAAAGACGCCCTCGGCGGCTACACCAGGGTG
GACACGAAGCCCTCGGCCACGTCGAGCTCCATGCGGCGGCGGCGGCACGCGTTCCGCAGGCAGGCCTCCA
GCACCTTCTCCTACTACGGCAAGCTTGGGTCCCACTGCTACCGCTACCGGCGCGCCAACGCCGTGGTGCT
GATCAAGCCGTCGCGCAGCATGAGCGACCTGTACGACATGCAGAAGCGGCAGCGGCAGCACCGGCACCGG
AACCAGAGCGGGGCCACCACCTCCAGCGGGGACACCGAGAGTGAGGAGGGGGAGGGCGAGACCACGGTGC
GCCTGCTGTGGCTCTCCATGCTGAAGATGCCCAGGGAGCTGATGCGGCTGTGCCTCTGCCACCTCCTCAC
CTGGTTCTCTGTCATCGCCGAGGCCGTGTTCTACACCGACTTCATGGGCCAGGTCATCTTCGAAGGCGAC
CCCAAGGCCCCCTCGAACTCGACCGCCTGGCAAGCCTACAACGCCGGGGTCAAGATGGGCTGCTGGGGCC
TGGTCATTTATGCCGCCACTGGTGCTATTTGTTCAGCCCTGTTACAGAAGTACTTGGACAACTACGACCT
GAGCGTCAGGGTGATCTACGTGCTGGGGACGCTGGGCTTCTCTGTCGGCACAGCCGTGATGGCCATGTTT
CCCAACGTCTACGTCGCCATGGTCACCATCAGCACCATGGGCATCGTCTCCATGAGCATCTCCTACTGCC
CGTACGCCCTGCTGGGCCAGTACCATGACATCAAGCAGTACATCCACCACAGCCCCGGGAACTCCAAGCG
AGGGTTTGGCATAGATTGTGCCATCCTGTCCTGCCAAGTGTACATCTCGCAGATCCTGGTGGCCTCTGCC
CTTGGGGGCGTGGTCGACGCCGTGGGGACTGTCCGCGTCATCCCCATGGTGGCCTCTGTGGGCTCTTTCC
TGGGCTTCCTGACGGCCACATTCCTGGTGATCTATCCCAACGTGTCAGAGGAGGCCAAGGAGGAGCAGAA
AGGCCTGTCTTCCCCGTTGGCCGGCGAAGGCAGGGCCGGTGGGAACAGCGAAAAGCCCACCGTGCTGAAG
CTCACGCGGAAGGAGGGCCTGCAGGGACCGGTGGAGACAGAACGCCTGCAGGTATTGACGTCTGTCAGAT
CTCGTCACATTGGCTGGTGCCGCAGCTGTTGGAGAGTATTTTTCTTTATGATTATTTTAGAAAAAAAATT
TTCTTTTCCACAATGTGGTTCTCTTAGAAGAATGACGTATCTTCTTTTCCTCAGCGAGTTGGACACATTG
TGCCCAGGGCAGCCCTGTCCTTGGGCAGCGACCGCACACCAAAGCTGGGAGGAGGCTGGTCCGGGGGGCC
TGGGCAGAAGACAGTGA

Translation (798 aa):
MGKASPASGLSRPKTLVSPLRSNQWSLQKGLPEQYYSLTWFLSPILGLIFTPLIGSASDRCTLSWGRRRP
FILALCVGVLFGVALFLNGSAIGLALGDVPNRQPIGIVLTVLGVVVLDFSADATEGPIRAYLLDVVDSEE
QDMALNIHAFSAGLGGAIGYVLGGLDWTQTFLGSWFRTQNQVLFFFAAIIFTVSVALHLFSIDEEQYSPQ
QERSAEEPGALDGGEPHGVPAFPDEVQSEHELALDYPDVDIMRSKSDSALHVPDTALDLEPELLFLHDIE
PSIFHDASYPATPRSTSQELAKTKLPRLATFLKEAAKEDETLLDNHLNEAKVPNGSGSPTKDALGGYTRV
DTKPSATSSSMRRRRHAFRRQASSTFSYYGKLGSHCYRYRRANAVVLIKPSRSMSDLYDMQKRQRQHRHR
NQSGATTSSGDTESEEGEGETTVRLLWLSMLKMPRELMRLCLCHLLTWFSVIAEAVFYTDFMGQVIFEGD
PKAPSNSTAWQAYNAGVKMGCWGLVIYAATGAICSALLQKYLDNYDLSVRVIYVLGTLGFSVGTAVMAMF
PNVYVAMVTISTMGIVSMSISYCPYALLGQYHDIKQYIHHSPGNSKRGFGIDCAILSCQVYISQILVASA
LGGVVDAVGTVRVIPMVASVGSFLGFLTATFLVIYPNVSEEAKEEQKGLSSPLAGEGRAGGNSEKPTVLK
LTRKEGLQGPVETERLQVLTSVRSRHIGWCRSCWRVFFFMIILEKKFSFPQCGSLRRMTYLLFLSELDTL
CPGQPCPWAATAHQSWEEAGPGGLGRRQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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