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Report for CCDS35211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35211.1 Public Homo sapiens X SCML1 24 110 108 CCDS HistoryNCBI Gene:6322Re-query CCDS DB by CCDS ID:35211.1Re-query CCDS DB by GeneID:6322See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380045.7 ENSP00000369384.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380045.7Link to Ensembl Protein Viewer:ENSP00000369384.3Re-query CCDS DB by Nucleotide ID:ENST00000380045Re-query CCDS DB by Protein ID:ENSP00000369384
Original member Current member EBI ENST00000398080.5 ENSP00000381154.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398080.5Link to Ensembl Protein Viewer:ENSP00000381154.1Re-query CCDS DB by Nucleotide ID:ENST00000398080Re-query CCDS DB by Protein ID:ENSP00000381154
Original member Current member NCBI NM_001037535.3 NP_001032624.1 Accepted alive Link to Nucleotide Sequence:NM_001037535.3Link to Protein Sequence:NP_001032624.1Re-query CCDS DB by Nucleotide ID:NM_001037535Re-query CCDS DB by Protein ID:NP_001032624Link to BLAST:NP_001032624.1
Original member Current member NCBI NM_001037536.3 NP_001032625.1 Accepted alive Link to Nucleotide Sequence:NM_001037536.3Link to Protein Sequence:NP_001032625.1Re-query CCDS DB by Nucleotide ID:NM_001037536Re-query CCDS DB by Protein ID:NP_001032625Link to BLAST:NP_001032625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032624.1 208 Q9UN30-1 208 100% 0 0
NP_001032625.1 208 Q9UN30-1 208 100% 0 0

Chromosomal Locations for CCDS 35211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 17749954 17750293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17751815 17751966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 17753258 17753392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGAAGAAAAATGAGGTTTACGAGACATTCTCCTACCCTGAAAGTTACAGCCCCACTTTACCAGTGTCAA
GGCGTGAGAATAATTCCCCGAGCAACCTTCCAAGGCCATCCTTTTGCATGGAAGAATACCAGCGAGCTGA
GCTGGAGGAGGACCCGATCCTCAGCCGCACTCCGAGTCCAGTGCATCCCTCAGATTTCTCTGAGCATAAT
TGTCAGCCGTATTATGCATCTGATGGTGCAACGTATGGTTCTTCTTCAGGGCTCTGCCTTGGCAACCCTC
GGGCTGACAGCATCCACAACACTTACTCAACTGACCATGCTTCTGCAGCACCACCTTCAGTTACAAGGTC
ACCAGTTGAAAATGACGGTTACATAGAGGAAGGAAGCATCACTAAGCACCCTTCAACCTGGTCGGTGGAA
GCAGTGGTCCTATTTCTAAAACAAACAGATCCTCTTGCATTATGCCCTCTTGTCGACCTCTTCAGAAGCC
ATGAAATTGACGGGAAGGCTCTGCTCCTACTCACGAGTGACGTGTTGCTGAAGCACTTGGGGGTGAAGCT
GGGAACGGCTGTGAAGCTATGCTACTACATTGACCGACTTAAACAAGGAAAATGCTTTGAAAATTGA

Translation (208 aa):
MKKNEVYETFSYPESYSPTLPVSRRENNSPSNLPRPSFCMEEYQRAELEEDPILSRTPSPVHPSDFSEHN
CQPYYASDGATYGSSSGLCLGNPRADSIHNTYSTDHASAAPPSVTRSPVENDGYIEEGSITKHPSTWSVE
AVVLFLKQTDPLALCPLVDLFRSHEIDGKALLLLTSDVLLKHLGVKLGTAVKLCYYIDRLKQGKCFEN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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