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Report for CCDS35315.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
35315.1 |
Public |
Homo sapiens |
X |
ARHGEF9 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:23229](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:35315.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:23229](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome X in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 35315.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000253401.10 |
ENSP00000253401.6 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000253401.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000253401.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000253401](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000253401](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000671907.1 |
ENSP00000500829.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000671907.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000500829.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000671907](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000500829](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001369030.1 |
NP_001355959.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001369030.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001355959.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001369030](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001355959](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001355959.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_015185.3 |
NP_056000.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_015185.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_056000.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_015185](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_056000](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_056000.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 35315.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1551 nt): ATGACGTTGCTGATCACTGGAGATTCCATCGTTAGTGCTGAGGCAGTATGGGATCACGTCACCATGGCCA ACCGGGAGTTGGCATTTAAAGCTGGCGACGTCATCAAAGTCTTGGATGCTTCCAACAAGGATTGGTGGTG GGGCCAGATCGACGATGAGGAGGGATGGTTTCCTGCCAGCTTTGTGAGGCTCTGGGTGAACCAGGAGGAT GAGGTGGAGGAGGGGCCCAGCGATGTGCAGAACGGACACCTGGACCCCAATTCAGACTGCCTCTGTCTGG GGCGGCCACTACAGAACCGGGACCAGATGCGGGCCAATGTCATCAATGAGATAATGAGCACTGAGCGTCA CTACATCAAGCACCTCAAGGATATTTGTGAGGGCTATCTGAAGCAGTGCCGGAAGAGAAGGGACATGTTC AGTGACGAGCAACTGAAGGTAATCTTTGGGAACATTGAAGATATCTACAGATTTCAGATGGGCTTTGTGA GAGACCTGGAGAAACAGTATAACAATGATGACCCCCACCTCAGCGAGATAGGACCCTGCTTCCTAGAGCA CCAAGATGGATTCTGGATATACTCTGAGTATTGTAACAACCACCTGGATGCTTGCATGGAGCTCTCCAAA CTGATGAAGGACAGCCGCTACCAGCACTTCTTTGAGGCCTGTCGCCTCTTGCAGCAGATGATTGACATTG CTATCGATGGTTTCCTTTTGACTCCAGTGCAGAAGATCTGCAAGTATCCCTTACAGTTGGCTGAGCTCCT AAAGTATACTGCCCAAGACCACAGTGACTACAGGTATGTGGCAGCTGCTTTGGCTGTCATGAGAAATGTG ACTCAGCAGATCAACGAACGCAAGCGACGTTTAGAGAATATTGACAAGATTGCTCAGTGGCAGGCTTCTG TCCTAGACTGGGAGGGCGAGGACATCCTAGACAGGAGCTCGGAGCTGATCTACACTGGGGAGATGGCCTG GATCTACCAGCCCTACGGCCGCAACCAGCAGCGGGTCTTCTTCCTGTTTGACCACCAGATGGTCCTCTGC AAGAAGGACCTAATCCGGAGAGACATCCTGTACTACAAAGGCCGCATTGACATGGATAAATATGAGGTAG TTGACATTGAGGATGGCAGAGATGATGACTTCAATGTCAGCATGAAGAATGCCTTTAAGCTTCACAACAA GGAGACTGAGGAGATACATCTGTTCTTTGCCAAGAAGCTGGAGGAAAAAATACGCTGGCTCAGGGCTTTC AGAGAAGAGAGGAAAATGGTACAGGAAGATGAAAAAATTGGCTTTGAAATTTCTGAAAACCAGAAGAGGC AGGCTGCAATGACTGTGAGAAAAGTCCCTAAGCAAAAAGGTGTCAACTCTGCCCGCTCAGTTCCTCCTTC CTACCCACCACCGCAGGACCCGTTAAACCACGGCCAGTACCTGGTCCCCGACGGCATCGCTCAGTCGCAG GTCTTTGAGTTCACCGAACCCAAGCGCAGCCAGTCACCATTCTGGCAAAACTTCAGCAGGTTAACCCCCT TCAAAAAATGA
Translation (516 aa): MTLLITGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQED EVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMF SDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNHLDACMELSK LMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNV TQQINERKRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLC KKDLIRRDILYYKGRIDMDKYEVVDIEDGRDDDFNVSMKNAFKLHNKETEEIHLFFAKKLEEKIRWLRAF REERKMVQEDEKIGFEISENQKRQAAMTVRKVPKQKGVNSARSVPPSYPPPQDPLNHGQYLVPDGIAQSQ VFEFTEPKRSQSPFWQNFSRLTPFKK
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