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Report for CCDS35374.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35374.1 Public Homo sapiens X LONRF3 24 110 108 CCDS HistoryNCBI Gene:79836Re-query CCDS DB by CCDS ID:35374.1Re-query CCDS DB by GeneID:79836See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35374.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371628.8 ENSP00000360690.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371628.8Link to Ensembl Protein Viewer:ENSP00000360690.3Re-query CCDS DB by Nucleotide ID:ENST00000371628Re-query CCDS DB by Protein ID:ENSP00000360690
Original member Current member NCBI NM_001031855.3 NP_001027026.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001031855.3Link to Protein Sequence:NP_001027026.1Re-query CCDS DB by Nucleotide ID:NM_001031855Re-query CCDS DB by Protein ID:NP_001027026Link to BLAST:NP_001027026.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001027026.1 759 Q496Y0-1 759 100% 0 0

Chromosomal Locations for CCDS 35374.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 118974781 118975597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118978345 118978463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118982821 118982943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118989408 118989672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118990470 118990560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119006121 119006235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119009126 119009247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119011815 119011973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119013039 119013201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119014207 119014356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 119017535 119017690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2280 nt):
ATGGAGTCAGTACGGATCGAACAGATGCTGAGCTTGCCCGCTGAGGTCAGCAGCGACAACTTGGAGTCGG
CGGAGCGAGGGGCATCAGCGGCCCAAGTAGACATGGGCCCCCACCCAAAGGTGGCTGCAGAGGGCCCCGC
ACCTCTACCGACGCGGGAGCCAGAGCAAGAGCAGTCTCCGGGGACCTCAACGCCGGAGAGCAAAGTCCTG
CTCACGCAGGCAGACGCCTTGGCGTCCCGGGGGCGAATCCGTGAAGCCCTCGAGGTGTATAGACAGCTCT
CCGAGCGGCAGCAGCTGGTGGCTGAGCAGCTGGAGCAGCTGGTGCGCTGCCTGGCGGAGAAAGTCCCGCA
AGGCGAGGCGCTGGCGCCGGCGCCCCCGGACGAGGGTAGCACTGCAAGCGGCACCGTGGCGGCGGAAGAG
ACGGGGGCCGCCGCGGCTGCGGCGGCCACCGAGGTGTGGGACGGCTTTAAGTGCCGGAAATGTCATGGGT
TTCTATCAGACCCCGTGTCCTTGTCGTGTGGCCACACCTTTTGTAAACTGTGCCTGGAACGTGGGCGGGC
CGCCGACCGGCGCTGTGCGCTGTGCGGGGTCAAGCTCTCCGCCTTGATGGTGGCCACTGGGCGGGCGCGT
GGAGCCCGGCGGGCTGGGCAGCAGCCGCCGCCGCCGCTGCGAGTCAACGTGGTGCTCAGCGGCCTCCTCG
GCAAGTTGTTTCCAGGCCCAGCGCGAGCGTCGCAACTCCGGCACGAGGGCAACCGACTGTACCGCGAGCG
CCAGGTGGAGGCGGCACTGCTCAAGTACAACGAGGCAGTTAAGTTGGCTCCAAATGACCACTTGCTTTAT
AGCAATCGGTCTCAGATTTATTTCACCTTGGAGTCTCATGAGAATGCACTGCATGATGCAGAAATAGCAT
GTAAGCTCCGCCCGATGGGTTTTAAGGCACATTTCAGAAAAGCCCAAGCCTTAGCCACCCTAGGCAAGGT
GGAGGAGGCACTAAGGGAGTTTCTCTACTGTGTATCCCTTGATGGAAAGAACAAGAGAGCAAGATGTGAA
GCCCAAAGAGACAATCTGGAGCTCCCACATTGTTCTAGTCAGGAGGAAGCAGCAGCCAGGGGAGATGGCA
GCAGTCTGATGGACCCAGCTAAAGTGAAGGGGGATGGTCAGCAGCACCACATGAAAGACCAGGAAGAAGA
GGAGGAGAAGTGGGATGCTACCTCTCCAAAAGCTGCTTCCAGCAAGACTGGAAAATGCCAGGAAAAGAAA
AGGAAACATTGCCAGATTGAATCCCAAGAAGAAACGGGGATGCCTAATAAAGCCTCCAAGCAAGATCCTC
CCACTGATCAGGGGGACAAACCTGCTCTCAGTTTACCACTTGCATCTTTCGACGCATCTGACCTTGAATG
CGCTCTATGTATGAGATTATTCTATGAGCCAGTCACAACACCTTGCGGGCATACTTTTTGCTTAAAATGC
CTAGAAAGATGCCTAGATCACAACGCAAAGTGTCCATTGTGCAAAGACGGTCTTTCACAGTGCTTGGCAT
CAAGAAAATACAGCAAAAATGTAATAATGGAGGAGCTCATAGCTAAATTCCTTCCAGAAGAACTGAAGGA
ACGAAGGAAGCTTTATGAAGAGGAAATGGAAGAACTTTCTAACCTTAATAAGAATGTGCCTATTTTCGTG
TGTACTATGGCCTATCCCACCGTTCCTTGTCCCCTGCACATCTTTGAGCCTTGTTACCGCCTGATGATTC
GTAGATGCATTGAGACAGGCACGAGACAGTTTGGCATGTGCCTTGGAGATCCTGTCAAAGGGTTTGCAGA
ATATGGCTGCATCCTAGAGATCAGAAATGTTCAATTCTTTGCTGATGGCCGCTCAGTGGTTGACAGCATA
GGCAAGAGGCGCTTCAGGGTGCTCCATCAGAGCCAGCGGGATGGCTACAACACAGCCGACATTGAATACA
TTGAAGACCAAAAGGTTCAGGGAGAGGATTGTGCTGAGCTCATGGGATTACATAACTGTGTCTATCAGCA
AGCATCATTGTGGTTTCATTCGCTCAAATTATCCCTAAAGAATCGGATACTCAATCACTTTGGTCCCATG
CCGGAGAAAGACGCCGATCCTCAGATGAACCCGAATGGCCCAGCCTGGTGCTGGTGGATGTTAGCAGTTC
TTCCCTTGGAAAGCCGAGCTCAGCTCCCCTTCCTAGCAATGAGGTCCTTAAAGGACAGACTGAATGGTAT
TCGACGAGTCCTGGCCTTCATATCCCGAAACCAAAACTAG

Translation (759 aa):
MESVRIEQMLSLPAEVSSDNLESAERGASAAQVDMGPHPKVAAEGPAPLPTREPEQEQSPGTSTPESKVL
LTQADALASRGRIREALEVYRQLSERQQLVAEQLEQLVRCLAEKVPQGEALAPAPPDEGSTASGTVAAEE
TGAAAAAAATEVWDGFKCRKCHGFLSDPVSLSCGHTFCKLCLERGRAADRRCALCGVKLSALMVATGRAR
GARRAGQQPPPPLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVKLAPNDHLLY
SNRSQIYFTLESHENALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGKNKRARCE
AQRDNLELPHCSSQEEAAARGDGSSLMDPAKVKGDGQQHHMKDQEEEEEKWDATSPKAASSKTGKCQEKK
RKHCQIESQEETGMPNKASKQDPPTDQGDKPALSLPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKC
LERCLDHNAKCPLCKDGLSQCLASRKYSKNVIMEELIAKFLPEELKERRKLYEEEMEELSNLNKNVPIFV
CTMAYPTVPCPLHIFEPCYRLMIRRCIETGTRQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSI
GKRRFRVLHQSQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYQQASLWFHSLKLSLKNRILNHFGPM
PEKDADPQMNPNGPAWCWWMLAVLPLESRAQLPFLAMRSLKDRLNGIRRVLAFISRNQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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