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Report for CCDS3538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3538.1 Public Homo sapiens 4 CSN3 24 110 108 CCDS HistoryNCBI Gene:1448Re-query CCDS DB by CCDS ID:3538.1Re-query CCDS DB by GeneID:1448See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304954.4 ENSP00000304822.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304954.4Link to Ensembl Protein Viewer:ENSP00000304822.3Re-query CCDS DB by Nucleotide ID:ENST00000304954Re-query CCDS DB by Protein ID:ENSP00000304822
Original member Current member EBI ENST00000689459.1 ENSP00000508633.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689459.1Link to Ensembl Protein Viewer:ENSP00000508633.1Re-query CCDS DB by Nucleotide ID:ENST00000689459Re-query CCDS DB by Protein ID:ENSP00000508633
Original member Current member NCBI NM_001394997.1 NP_001381926.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394997.1Link to Protein Sequence:NP_001381926.1Re-query CCDS DB by Nucleotide ID:NM_001394997Re-query CCDS DB by Protein ID:NP_001381926Link to BLAST:NP_001381926.1
Original member Current member NCBI NM_005212.3 NP_005203.2 Accepted alive Link to Nucleotide Sequence:NM_005212.3Link to Protein Sequence:NP_005203.2Re-query CCDS DB by Nucleotide ID:NM_005212Re-query CCDS DB by Protein ID:NP_005203Link to BLAST:NP_005203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381926.1 182 P07498 182 100% 0 0
NP_005203.2 182 P07498 182 100% 0 0

Chromosomal Locations for CCDS 3538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 70244820 70244873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70247818 70247850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 70248998 70249459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGAAGAGTTTTCTTCTAGTTGTCAATGCCCTGGCATTAACCCTGCCTTTTTTGGCTGTGGAGGTTCAAA
ACCAGAAACAACCAGCATGCCATGAGAATGATGAAAGACCATTCTATCAGAAAACAGCTCCATATGTCCC
AATGTATTATGTGCCAAATAGCTATCCTTATTATGGAACCAATTTGTACCAACGTAGACCAGCTATAGCA
ATTAATAATCCATATGTGCCTCGCACATATTATGCAAACCCAGCTGTAGTTAGGCCACATGCCCAAATTC
CTCAGCGGCAATACCTGCCAAATAGCCACCCACCCACTGTGGTACGTCGCCCAAACCTGCATCCATCATT
TATTGCCATCCCCCCAAAGAAAATTCAGGATAAAATAATCATCCCTACCATCAATACCATTGCTACTGTT
GAACCTACACCAGCTCCTGCCACTGAACCAACGGTGGACAGTGTAGTCACTCCAGAAGCTTTTTCAGAGT
CCATCATCACGAGCACCCCTGAGACAACCACAGTTGCAGTTACTCCACCTACGGCATAA

Translation (182 aa):
MKSFLLVVNALALTLPFLAVEVQNQKQPACHENDERPFYQKTAPYVPMYYVPNSYPYYGTNLYQRRPAIA
INNPYVPRTYYANPAVVRPHAQIPQRQYLPNSHPPTVVRRPNLHPSFIAIPPKKIQDKIIIPTINTIATV
EPTPAPATEPTVDSVVTPEAFSESIITSTPETTTVAVTPPTA


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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