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Report for CCDS35406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35406.1 Public Homo sapiens X CT45A5 24 110 108 CCDS HistoryNCBI Gene:441521Re-query CCDS DB by CCDS ID:35406.1Re-query CCDS DB by GeneID:441521See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487941.6 ENSP00000427342.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487941.6Link to Ensembl Protein Viewer:ENSP00000427342.2Re-query CCDS DB by Nucleotide ID:ENST00000487941Re-query CCDS DB by Protein ID:ENSP00000427342
Original member Current member EBI ENST00000617203.1 ENSP00000483658.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617203.1Link to Ensembl Protein Viewer:ENSP00000483658.1Re-query CCDS DB by Nucleotide ID:ENST00000617203Re-query CCDS DB by Protein ID:ENSP00000483658
Original member Current member EBI ENST00000698999.1 ENSP00000514077.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000698999.1Link to Ensembl Protein Viewer:ENSP00000514077.1Re-query CCDS DB by Nucleotide ID:ENST00000698999Re-query CCDS DB by Protein ID:ENSP00000514077
Original member Current member NCBI NM_001007551.6 NP_001007552.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007551.6Link to Protein Sequence:NP_001007552.2Re-query CCDS DB by Nucleotide ID:NM_001007551Re-query CCDS DB by Protein ID:NP_001007552Link to BLAST:NP_001007552.2
Original member Current member NCBI NM_001172288.2 NP_001165759.2 Accepted alive Link to Nucleotide Sequence:NM_001172288.2Link to Protein Sequence:NP_001165759.2Re-query CCDS DB by Nucleotide ID:NM_001172288Re-query CCDS DB by Protein ID:NP_001165759Link to BLAST:NP_001165759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007552.2 189 P0DMU8 189 100% 0 0
NP_001165759.2 189 P0DMU8 189 100% 0 0

Chromosomal Locations for CCDS 35406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135777636 135777693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135778918 135779011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135779393 135779641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135781561 135781729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTCCCAGGGAATGTGACA
GTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTAT
TGCAGGCTCTGCCATGTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAATTGGAT
TCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATGGGATGATGCAGAAACCTGGTAGCAATGCACCTG
TGGGAGGAAACGTTACCAGCAGTTTCTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAA
AAGCCAACGAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAACTCCGATGCGTTGGACAAAAA
TATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCAAGGACCTACTGCAGTCAGGAAGCGATTTTTTGAAT
CCATCATCAAGGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTGAAACG
TATGATTTGA

Translation (189 aa):
MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLD
SQIDDFTGFSKDGMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQK
YEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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