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Report for CCDS35484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35484.1 Public Homo sapiens Y RBMY1J 24 110 108 CCDS HistoryNCBI Gene:378951Re-query CCDS DB by CCDS ID:35484.1Re-query CCDS DB by GeneID:378951See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35484.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250831.6 ENSP00000250831.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250831.6Link to Ensembl Protein Viewer:ENSP00000250831.5Re-query CCDS DB by Nucleotide ID:ENST00000250831Re-query CCDS DB by Protein ID:ENSP00000250831
Original member Current member NCBI NM_001006117.4 NP_001006117.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006117.4Link to Protein Sequence:NP_001006117.2Re-query CCDS DB by Nucleotide ID:NM_001006117Re-query CCDS DB by Protein ID:NP_001006117Link to BLAST:NP_001006117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006117.2 496 Q15415-1 496 100% 0 0

Chromosomal Locations for CCDS 35484.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 22405448 22405556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22406025 22406128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22409152 22409329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22411245 22411397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22413408 22413522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22414478 22414588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22415029 22415139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22415574 22415684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22416608 22416718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22416805 22416893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 22417305 22417603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGTAGAAGCAGATCATCCTGGCAAGCTTTTCATTGGTGGCCTCAATAGAGAAACCAATGAGAAGATGC
TTAAAGCAGTATTTGGGAAACATGGTCCCATATCAGAAGTTCTTTTGATAAAGGATCGAACCAGCAAATC
CAGAGGCTTTGCATTTATTACTTTTGAGAACCCTGCAGATGCTAAGAATGCTGCGAAAGATATGAATGGA
ACGTCTTTGCATGGAAAAGCAATAAAAGTAGAACAAGCCAAGAAACCATCTTTTCAAAGTGGTGGTAGGC
GGAGACCACCAGCTTCTTCGAGAAACAGAAGCCCTTCAGGAAGTCTGAGATCTGCAAGAGGAAGCAGTGG
AGGAACAAGAGGGTGGCTTCCCTCACATGAAGGGCACCTGGATGATGGTGGATACACTCCTGATCTCAAG
ATGAGTTATTCTAGGGGACTCATTCCAGTTAAAAGAGGTCCATCTTCAAGAAGTGGAGGTCCTCCTCCGA
AAAAATCTGCTCCTTCTGCTGTGGCAAGAAGCAATAGTTGGATGGGAAGCCAAGGTCCCATGTCACAAAG
AAGAGAGAATTATGGAGTTCCTCCACGCAGAGCGACAATATCTTCCTGGAGAAATGATCGCATGTCAACA
AGACATGATGGTTATGCAACTAACGATGGAAATCATCCAAGTTGCCAAGAAACGAGGGATTATGCTCCAC
CATCTAGAGGCTATGCATACCGTGATAATGGTCATTCTAATCGGGATGAACATTCCTCTAGAGGATATAG
AAATCATCGAAGTTCCCGAGAAACTAGGGATTATGCTCCACCATCTAGAGGCCATGCATACCGTGATTAT
GGTCATTCTCGTCGGGATGAAAGTTATTCTAGAGGATACAGAAATCATCGAAGTTCCCGAGAAACTAGGG
AGTATGCTCCACCATCTAGAGGCCATGGATACCGTGATTATGGTCATTCTCGTCGACATGAAAGTTATTC
TAGAGGATATAGAAATCATCCAAGTTCCCGAGAAACCAGGGATTATGCTCCACCACATAGAGACTATGCA
TACCGTGATTATGGTCATTCTAGTTGGGATGAACATTCCTCTAGAGGATATAGTTATCATGATGGCTACG
GTGAGGCCCTTGGTAGAGATCATTCTGAACATCTAAGTGGAAGTTCTTATAGAGATGCACTTCAGAGATA
CGGGACCTCTCATGGTGCACCACCTGCAAGAGGGCCTCGGATGTCTTATGGTGGAAGCACCTGCCACGCA
TATAGTAATACACGAGATAGATATGGCAGAAGTTGGGAGAGTTACTCGAGCTGTGGTGATTTTCATTATT
GTGATCGTGAGCATGTTTGCAGAAAAGACCAAAGGAATCCGCCTTCTCTGGGTAGGGTGCTCCCTGATCC
TCGTGAAGCATATGGTAGCTCAAGTTATGTGGCATCTATAGTAGATGGTGGGGAGAGTCGATCTGAAAAA
GGAGACTCGAGCAGATATTAA

Translation (496 aa):
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG
TSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSSGGTRGWLPSHEGHLDDGGYTPDLK
MSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST
RHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDY
GHSRRDESYSRGYRNHRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREAYGSSSYVASIVDGGESRSEK
GDSSRY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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