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Report for CCDS35493.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35493.1 Public Homo sapiens 4 MAP9 24 110 108 CCDS HistoryNCBI Gene:79884Re-query CCDS DB by CCDS ID:35493.1Re-query CCDS DB by GeneID:79884See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35493.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311277.9 ENSP00000310593.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311277.9Link to Ensembl Protein Viewer:ENSP00000310593.4Re-query CCDS DB by Nucleotide ID:ENST00000311277Re-query CCDS DB by Protein ID:ENSP00000310593
Original member Current member EBI ENST00000650955.1 ENSP00000498412.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000650955.1Link to Ensembl Protein Viewer:ENSP00000498412.1Re-query CCDS DB by Nucleotide ID:ENST00000650955Re-query CCDS DB by Protein ID:ENSP00000498412
Original member Current member NCBI NM_001039580.2 NP_001034669.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039580.2Link to Protein Sequence:NP_001034669.1Re-query CCDS DB by Nucleotide ID:NM_001039580Re-query CCDS DB by Protein ID:NP_001034669Link to BLAST:NP_001034669.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034669.1 647 Q49MG5-1 647 100% 0 0

Chromosomal Locations for CCDS 35493.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155347783 155347905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155352596 155352728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155352912 155353057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155353179 155353340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155355071 155355160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155355716 155355884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155357449 155357519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155360168 155360415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155362048 155362141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155368586 155368812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155373136 155373456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155374937 155375021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155375776 155375850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1944 nt):
ATGTCTGATGAAGTTTTTAGCACCACTTTGGCATATACAAAGAGTCCAAAAGTTACCAAAAGAACTACTT
TCCAGGATGAGCTAATAAGAGCAATTACAGCTCGCTCAGCCAGACAAAGGAGTTCTGAATACTCAGATGA
CTTTGACAGTGATGAGATTGTTTCTTTAGGTGATTTTTCTGACACTTCAGCAGATGAAAATTCAGTTAAT
AAAAAAATGAATGACTTTCATATATCAGATGATGAAGAAAAGAATCCTTCAAAACTATTGTTTTTGAAAA
CCAATAAATCAAACGGTAACATAACCAAAGATGAGCCAGTGTGTGCCATCAAAAATGAAGAGGAAATGGC
ACCTGATGGGTGTGAAGACATTGTTGTAAAATCTTTCTCTGAATCTCAAAATAAGGATGAGGAATTTGAA
AAAGACAAAATAAAAATGAAACCTAAACCCAGAATTCTTTCAATTAAAAGCACATCTTCAGCAGAAAACA
ACAGCCTTGACACAGATGATCACTTTAAACCATCACCTCGGCCAAGGAGTATGTTGAAAAAGAAAAGTCA
CATGGAGGAGAAGGATGGACTAGAAGATAAAGAAACTGCCCTCAGTGAAGAATTGGAGTTACATTCTGCA
CCTTCTTCCCTTCCAACGCCGAATGGCATACAATTAGAAGCTGAGAAAAAAGCATTCTCTGAAAACCTTG
ATCCTGAGGATTCATGCTTAACAAGTCTAGCATCATCATCACTTAAACAAATTCTTGGAGATTCTTTTTC
ACCAGGATCTGAGGGAAACGCATCTGGAAAAGATCCAAATGAAGAAATCACTGAAAACCATAATTCCTTG
AAATCAGATGAAAATAAAGAGAATTCATTTTCAGCAGACCATGTGACTACTGCAGTTGAGAAATCCAAGG
AAAGTCAAGTGACTGCTGATGACCTTGAAGAAGAAAAGGCAAAAGCGGAACTGATTATGGATGATGACAG
AACAGTTGATCCACTACTATCTAAATCTCAGAGTATCTTAATATCTACCAGTGCAACAGCATCTTCAAAG
AAAACAATTGAAGATAGAAATATAAAGAATAAAAAGTCAACAAATAATAGAGCATCCAGTGCATCTGCCA
GATTAATGACCTCTGAGTTTTTGAAGAAATCTAGTTCTAAAAGGAGAACTCCATCGACAACTACCTCTTC
TCACTATTTAGGGACTTTAAAAGTCTTGGACCAAAAACCTTCACAGAAACAGAGCATAGAACCTGATAGA
GCAGATAACATAAGGGCAGCTGTTTATCAGGAGTGGTTAGAAAAGAAAAATGTGTATTTACATGAAATGC
ACAGAATAAAAAGAATTGAAAGTGAAAACTTAAGGATCCAAAATGAACAGAAAAAAGCTGCTAAAAGAGA
AGAAGCATTAGCATCATTTGAGGCCTGGAAGGCTATGAAAGAAAAGGAAGCAAAGAAAATAGCTGCCAAA
AAGAGGCTTGAAGAAAAAAACAAGAAGAAAACTGAAGAAGAAAATGCTGCAAGAAAAGGAGAAGCACTAC
AAGCTTTTGAAAAATGGAAAGAGAAAAAGATGGAATATCTTAAAGAGAAAAATAGAAAGGAGAGAGAATA
TGAAAGAGCAAAGAAACAGAAAGAGGAGGAAACTGTTGCCGAGAAAAAGAAAGATAATTTAACTGCTGTT
GAGAAATGGAATGAAAAAAAGGAAGCTTTTTTCAAGCAAAAGGAAAAAGAAAAAATAAATGAGAAAAGAA
AGGAAGAACTGAAAAGAGCTGAGAAAAAAGATAAAGATAAACAAGCTATTAATGAATATGAAAAATGGCT
GGAAAATAAGGAAAAACAAGAAAGAATTGAACGAAAACAGAAGAAACGTCATTCCTTTCTTGAAAGTGAG
GCACTTCCTCCGTGGAGCCCTCCAAGCAGAACTGTGTTCGCAAAAGTGTTTTGA

Translation (647 aa):
MSDEVFSTTLAYTKSPKVTKRTTFQDELIRAITARSARQRSSEYSDDFDSDEIVSLGDFSDTSADENSVN
KKMNDFHISDDEEKNPSKLLFLKTNKSNGNITKDEPVCAIKNEEEMAPDGCEDIVVKSFSESQNKDEEFE
KDKIKMKPKPRILSIKSTSSAENNSLDTDDHFKPSPRPRSMLKKKSHMEEKDGLEDKETALSEELELHSA
PSSLPTPNGIQLEAEKKAFSENLDPEDSCLTSLASSSLKQILGDSFSPGSEGNASGKDPNEEITENHNSL
KSDENKENSFSADHVTTAVEKSKESQVTADDLEEEKAKAELIMDDDRTVDPLLSKSQSILISTSATASSK
KTIEDRNIKNKKSTNNRASSASARLMTSEFLKKSSSKRRTPSTTTSSHYLGTLKVLDQKPSQKQSIEPDR
ADNIRAAVYQEWLEKKNVYLHEMHRIKRIESENLRIQNEQKKAAKREEALASFEAWKAMKEKEAKKIAAK
KRLEEKNKKKTEEENAARKGEALQAFEKWKEKKMEYLKEKNRKEREYERAKKQKEEETVAEKKKDNLTAV
EKWNEKKEAFFKQKEKEKINEKRKEELKRAEKKDKDKQAINEYEKWLENKEKQERIERKQKKRHSFLESE
ALPPWSPPSRTVFAKVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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