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Report for CCDS35500.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35500.2 Public Homo sapiens 19 ZNF550 24 110 108 CCDS HistoryNCBI Gene:162972Re-query CCDS DB by CCDS ID:35500.2Re-query CCDS DB by GeneID:162972See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 35500.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data. All transcripts that can encode this protein are candidates for nonsense-mediated mRNA decay (NMD), but in the absence of transcripts that are not NMD candidates, this representation is considered an NMD exception because the gene is believed to be protein-coding.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 35500.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376230.7 ENSP00000469537.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376230.7Link to Ensembl Protein Viewer:ENSP00000469537.1Re-query CCDS DB by Nucleotide ID:ENST00000376230Re-query CCDS DB by Protein ID:ENSP00000469537
Original member Current member EBI ENST00000447310.5 ENSP00000469580.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447310.5Link to Ensembl Protein Viewer:ENSP00000469580.1Re-query CCDS DB by Nucleotide ID:ENST00000447310Re-query CCDS DB by Protein ID:ENSP00000469580
Original member Current member EBI ENST00000457177.5 ENSP00000469679.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457177.5Link to Ensembl Protein Viewer:ENSP00000469679.1Re-query CCDS DB by Nucleotide ID:ENST00000457177Re-query CCDS DB by Protein ID:ENSP00000469679
Original member Current member EBI ENST00000699333.1 ENSP00000514306.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000699333.1Link to Ensembl Protein Viewer:ENSP00000514306.1Re-query CCDS DB by Nucleotide ID:ENST00000699333Re-query CCDS DB by Protein ID:ENSP00000514306
Original member Current member NCBI NM_001277090.2 NP_001264019.1 Accepted alive Link to Nucleotide Sequence:NM_001277090.2Link to Protein Sequence:NP_001264019.1Re-query CCDS DB by Nucleotide ID:NM_001277090Re-query CCDS DB by Protein ID:NP_001264019Link to BLAST:NP_001264019.1
Original member Current member NCBI NM_001277091.2 NP_001264020.1 Accepted alive Link to Nucleotide Sequence:NM_001277091.2Link to Protein Sequence:NP_001264020.1Re-query CCDS DB by Nucleotide ID:NM_001277091Re-query CCDS DB by Protein ID:NP_001264020Link to BLAST:NP_001264020.1
Original member Current member NCBI NM_001277092.2 NP_001264021.1 Accepted alive Link to Nucleotide Sequence:NM_001277092.2Link to Protein Sequence:NP_001264021.1Re-query CCDS DB by Nucleotide ID:NM_001277092Re-query CCDS DB by Protein ID:NP_001264021Link to BLAST:NP_001264021.1
Original member Current member NCBI NM_001397372.1 NP_001384301.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001397372.1Link to Protein Sequence:NP_001384301.1Re-query CCDS DB by Nucleotide ID:NM_001397372Re-query CCDS DB by Protein ID:NP_001384301Link to BLAST:NP_001384301.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264019.1 422 Q7Z398-1 422 100% 0 0
NP_001264020.1 422 Q7Z398-1 422 100% 0 0
NP_001264021.1 422 Q7Z398-1 422 100% 0 0
NP_001384301.1 422 Q7Z398-1 422 100% 0 0

Chromosomal Locations for CCDS 35500.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57546975 57547993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57552627 57552722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57556231 57556357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57559656 57559682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCGGAGACGAAGGACGCAGCGCAGATGTTGGTGACCTTCAAGGATGTGGCTGTGACCTTTACCCGGG
AGGAGTGGAGACAGCTGGACCTGGCCCAGAGGACCCTGTACCGAGAGGTGATGCTGGAGACCTGTGGGCT
TCTGGTTTCACTAGGGCATCGGGTTCCCAAACCAGAGTTGGTCCACCTGCTAGAGCATGGGCAGGAGCTG
TGGATAGTGAAGAGAGGCCTCTCACATGCTACCTGTGCAGGTGACAGAGCACAAGTTCATACCAGAGAGC
CAACCACTTACCCGCCAGTCTTATCTGAGCGGGCCTTTCTCCGGGGAAGCCTGACTCTGGAATCTTCAAC
CTCAAGTGATTCGAGGTTGGGGAGAGCTAGGGATGAGGAAGGGCTTTTGGAAATGCAGAAAGGTAAAGTG
ACACCGGAGACAGACCTCCACAAGGAGACCCATCTTGGGAAAGTGAGCCTTGAAGGTGAAGGTTTGGGGA
CAGATGATGGTCTGCACTCCAGGGCATTACAAGAGTGGTTATCAGCAGATGTTCTCCATGAATGTGACTC
ACAGCAACCAGGGAAAGACGCCTTGATTCATGCAGGGACAAACCCCTACAAATGCAAGCAGTGTGGGAAA
GGTTTTAACAGGAAGTGGTATCTCGTTCGACATCAGAGGGTTCACACTGGAATGAAACCCTATGAATGCA
ATGCATGTGGGAAAGCCTTTAGCCAGAGCTCAACTCTCATTCGGCACTACCTCATCCACACCGGGGAGAA
ACCATACAAGTGCCTTGAGTGTGGGAAGGCCTTCAAACGCAGGTCGTACCTCATGCAGCACCATCCAATC
CACACTGGAGAGAAACCCTATGAGTGTAGTCAATGTCGAAAGGCCTTCACCCACCGGTCTACTTTTATTC
GCCATAATAGGACCCACACTGGAGAAAAGCCCTTTGAGTGCAAAGAATGTGAGAAAGCCTTTAGCAATAG
AGCCCACCTAATTCAACATTACATCATCCACACTGGAGAGAAGCCCTATGATTGCATGGCATGTGGAAAG
GCCTTCAGATGCAGCTCAGAACTCATACAGCACCAGCGGATTCACACTGGGGAGAAGCCCTATGAATGCA
CCCAGTGTGGGAAAGCCTTTCACCGGAGCACGTACCTCATTCAGCACTCTGTCATCCACACTGGGGAGAT
GCCCTACAAGTGTATCGAGTGTGGGAAGGCCTTCAAACGCAGGTCACACCTTCTGCAGCACCAAAGGGTC
CATACATGA

Translation (422 aa):
MAETKDAAQMLVTFKDVAVTFTREEWRQLDLAQRTLYREVMLETCGLLVSLGHRVPKPELVHLLEHGQEL
WIVKRGLSHATCAGDRAQVHTREPTTYPPVLSERAFLRGSLTLESSTSSDSRLGRARDEEGLLEMQKGKV
TPETDLHKETHLGKVSLEGEGLGTDDGLHSRALQEWLSADVLHECDSQQPGKDALIHAGTNPYKCKQCGK
GFNRKWYLVRHQRVHTGMKPYECNACGKAFSQSSTLIRHYLIHTGEKPYKCLECGKAFKRRSYLMQHHPI
HTGEKPYECSQCRKAFTHRSTFIRHNRTHTGEKPFECKECEKAFSNRAHLIQHYIIHTGEKPYDCMACGK
AFRCSSELIQHQRIHTGEKPYECTQCGKAFHRSTYLIQHSVIHTGEMPYKCIECGKAFKRRSHLLQHQRV
HT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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