NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3558.1 Public Homo sapiens 4 RASSF6 24 110 108 CCDS HistoryNCBI Gene:166824Re-query CCDS DB by CCDS ID:3558.1Re-query CCDS DB by GeneID:166824See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342081.7 ENSP00000340578.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000342081.7Link to Ensembl Protein Viewer:ENSP00000340578.3Re-query CCDS DB by Nucleotide ID:ENST00000342081Re-query CCDS DB by Protein ID:ENSP00000340578
Original member Current member NCBI NM_201431.2 NP_958834.1 Accepted alive Link to Nucleotide Sequence:NM_201431.2Link to Protein Sequence:NP_958834.1Re-query CCDS DB by Nucleotide ID:NM_201431Re-query CCDS DB by Protein ID:NP_958834Link to BLAST:NP_958834.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_958834.1 369 Q6ZTQ3-1 369 100% 0 0

Chromosomal Locations for CCDS 3558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 73576235 73576310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73576410 73576507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73576613 73576731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73581817 73581868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73582189 73582290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73585180 73585364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73587840 73587934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73593451 73593593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73598640 73598718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73611731 73611829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 73620439 73620500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1110 nt):
ATGCTCTGGGAGGAGACAGGCGCCGCCCCTGCGCCCGCGCGGGCCTCGGACCTCCCCTACAGGATATCCT
CAGACCATCTCAAAAAGGAGGAAAAGATGACTATGATGGCTCACCAGTACCCCTCTTGGATCTTCATTAA
TGAGAAGACATTCATAACCAGGGAACAACTTAATTCTTTATTGAAGACCTATAACATTTTTTATGAGAAC
CAGAAAAATCTGCATATTTTATATGGAGAGACTGAAGATGGCAAACTAATTGTTGAAGGAATGCTGGACA
TTTTCTGGGGAGTAAAACGACCTATACAGCTAAAAATACAAGATGAGAAGCCATTCTCTTCTTTTACTAG
TATGAAGTCATCAGACGTCTTCTCCAGCAAAGGAATGACACGCTGGGGGGAATTTGACGATCTCTATCGT
ATTAGTGAGCTGGACAGGACCCAGATTCCTATGTCTGAAAAAAGGAATTCCCAGGAAGACTATTTATCTT
ATCACAGCAACACCCTGAAGCCACATGCAAAGGATGAACCAGACTCCCCAGTGCTCTATAGAACCATGAG
TGAAGCAGCTCTGGTGAGAAAAAGGATGAAGCCTCTGATGATGGACAGAAAAGAAAGACAGAAAAATAGA
GCCTCTATTAATGGACACTTCTATAACCATGAAACATCAATTTTCATTCCAGCCTTTGAATCAGAAACTA
AGGTCAGAGTAAACAGTAACATGAGAACTGAAGAAGTAATAAAGCAACTTCTCCAAAAATTTAAGATTGA
AAATAGTCCCCAGGATTTTGCTCTTCACATTATTTTTGCAACAGGAGAACAAAGACGACTAAAGAAGACA
GACATTCCGCTACTGCAGAGGCTCCTACAGGGACCTTCTGAAAAGAATGCTCGCATTTTCCTCATGGATA
AAGATGCAGAAGAAATTAGCAGTGATGTGGCTCAGTACATTAACTTTCACTTTTCTCTCTTGGAATCCAT
TCTTCAAAGATTAAATGAAGAAGAGAAAAGAGAGATTCAAAGAATAGTAACAAAATTCAATAAAGAAAAG
GCGATTATACTGAAATGTCTTCAAAATAAACTAGTAATAAAAACAGAGACAACAGTTTAG

Translation (369 aa):
MLWEETGAAPAPARASDLPYRISSDHLKKEEKMTMMAHQYPSWIFINEKTFITREQLNSLLKTYNIFYEN
QKNLHILYGETEDGKLIVEGMLDIFWGVKRPIQLKIQDEKPFSSFTSMKSSDVFSSKGMTRWGEFDDLYR
ISELDRTQIPMSEKRNSQEDYLSYHSNTLKPHAKDEPDSPVLYRTMSEAALVRKRMKPLMMDRKERQKNR
ASINGHFYNHETSIFIPAFESETKVRVNSNMRTEEVIKQLLQKFKIENSPQDFALHIIFATGEQRRLKKT
DIPLLQRLLQGPSEKNARIFLMDKDAEEISSDVAQYINFHFSLLESILQRLNEEEKREIQRIVTKFNKEK
AIILKCLQNKLVIKTETTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH