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Report for CCDS35613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35613.1 Public Mus musculus 1 Pnkd 23 108 98 CCDS HistoryNCBI Gene:56695Re-query CCDS DB by CCDS ID:35613.1Re-query CCDS DB by GeneID:56695See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027370.12 ENSMUSP00000027370.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027370.12Link to Ensembl Protein Viewer:ENSMUSP00000027370.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027370Re-query CCDS DB by Protein ID:ENSMUSP00000027370
Original member Current member NCBI NM_001039509.1 NP_001034598.1 Accepted alive Link to Nucleotide Sequence:NM_001039509.1Link to Protein Sequence:NP_001034598.1Re-query CCDS DB by Nucleotide ID:NM_001039509Re-query CCDS DB by Protein ID:NP_001034598Link to BLAST:NP_001034598.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034598.1 385 Q69ZP3-1 385 100% 0 0

Chromosomal Locations for CCDS 35613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 74285071 74285137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74285842 74286010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74347385 74347500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74347652 74347764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74348763 74348821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74349308 74349400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74349714 74349877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74350617 74350703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74351537 74351652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 74351758 74351931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGCGTCCTCCGGGGGA
TCCTCTCTGGAGCCACAGCTAACAAGGCTTCCCAGAACAGGACCAGAGCACTGCAGAGCCACAGCTCACC
AGAATGCAAGGAGGAGCCCGAGCCCCTCTCCCCTGAGCTAGAATACATTCCCAGAAAGAGGGGCAAGAAC
CCCATGAAAGCCGTGGGGCTAGCCTGGTATAGCCTGTACACCCGAACCTGGCTTGGGTACCTCTTCTACC
GACAGCAGCTTCGGAGGGCTCGGAATCGCTATCCCAAAGGCCACTCCAAAACTCAGCCCCGCCTCTTCAA
TGGAGTGAAGGTGCTTCCCATCCCTGTCCTCTCGGACAACTACAGCTACCTCATCATCGACACCCAGGCT
GGGCTGGCAGTGGCTGTGGACCCCTCAGACCCGAGGGCTGTGCAGGCTTCCATTGAAAAGGAAAGAGTTA
ACTTGGTTGCCATTCTCTGCACCCACAAGCACTGGGACCACAGTGGAGGGAACCGTGACCTCAGCCGGCG
GCACAGGGACTGTCGAGTGTATGGGAGCCCTCAGGATGGTATCCCCTACCTCACCCACCCCCTGTGTCAT
CAAGATGTGGTCAGCGTGGGACGACTTCAGATTCGAGCCCTAGCCACCCCTGGCCACACTCAAGGCCATC
TGGTCTACCTGCTGGATGGGGAGCCCTACAAAGGTCCTTCCTGCCTCTTCTCAGGGGACCTGCTCTTCCT
CTCTGGCTGTGGACGGACCTTCGAAGGCACAGCGGAGACCATGCTGAGCTCACTGGACACTGTGTTAGAC
CTGGGGGATGACACCCTGCTGTGGCCTGGGCATGAATACGCAGAAGAGAACCTGGGCTTTGCAGGCGTGG
TGGAGCCCGAGAACTTGGCTCGTGAGAGGAAGATGCAGTGGGTACAGAGGCAACGGATGGAACGCAAGAG
CACATGCCCATCCACCCTGGGAGAGGAACGCGCCTACAACCCATTCCTGAGAACCCATTGCCTGGAACTA
CAGGAGGCTCTGGGGCCAGGGCCAGGCCCCACCAGTGATGACGGCTGCTCCCGGGCCCAGCTCCTGGAGG
AGCTGCGCCGCCTGAAGGACATGCATAAAAGCAAGTGA

Translation (385 aa):
MAAVVAATALKGRGARNARVLRGILSGATANKASQNRTRALQSHSSPECKEEPEPLSPELEYIPRKRGKN
PMKAVGLAWYSLYTRTWLGYLFYRQQLRRARNRYPKGHSKTQPRLFNGVKVLPIPVLSDNYSYLIIDTQA
GLAVAVDPSDPRAVQASIEKERVNLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCH
QDVVSVGRLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVLD
LGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQRMERKSTCPSTLGEERAYNPFLRTHCLEL
QEALGPGPGPTSDDGCSRAQLLEELRRLKDMHKSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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