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Report for CCDS35691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35691.1 Public Mus musculus 1 Tfcp2l1 23 108 98 CCDS HistoryNCBI Gene:81879Re-query CCDS DB by CCDS ID:35691.1Re-query CCDS DB by GeneID:81879See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027629.9 ENSMUSP00000027629.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027629.9Link to Ensembl Protein Viewer:ENSMUSP00000027629.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000027629Re-query CCDS DB by Protein ID:ENSMUSP00000027629
Original member Current member NCBI NM_023755.2 NP_076244.2 Accepted alive Link to Nucleotide Sequence:NM_023755.2Link to Protein Sequence:NP_076244.2Re-query CCDS DB by Nucleotide ID:NM_023755Re-query CCDS DB by Protein ID:NP_076244Link to BLAST:NP_076244.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076244.2 479 Q3UNW5 479 100% 0 0

Chromosomal Locations for CCDS 35691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 118628041 118628102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118632242 118632393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118652301 118652377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118652869 118652974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118653716 118653822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118656368 118656520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118659008 118659118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118661980 118662071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118664759 118664807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118664898 118664991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118666116 118666206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118668631 118668734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118669389 118669531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118675575 118675626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 118677388 118677434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGCTGTTCTGGCACACGCAGCCCGAACACTACAACCAGCACAACTCTGGCAGCTACTTGCGTGATGTGC
TGGCTCTGCCCATCTTCAAGCAGGAAGAGCCGCAGCTATCTCCTGAGAATGGGGCCCGCTTGCCGCCCCT
ACAGTATGTGTTGTGTGCCGCCACCTCTCCAGCGGTGAAGCTACATGAAGAGACCTTAACATACCTCAAT
CAAGGTCAGTCGTATGAAATCCGGCTGCTGGAGAATCGGAAGCTAGGGGACTTCCAAGATCTGAACACGA
AATATGTGAAGAGCATCATCCGTGTCGTTTTCCATGACCGCCGGCTGCAGTACACAGAGTACCAACAGTT
GGAGGGTTGGCGGTGGAGTCGGCCTGGGGACCGCATCCTGGACATTGATATTCCACTGTCTGTTGGTATC
TTGGACCCCAGGGCCAGCCCAACCCAGCTGAATGCTGTGGAGTTTTTGTGGGACCCATCGAAGAGAGCAT
CTGCATTCATTCAGGTGCACTGTATCAGCACGGAATTCACCCCCAGGAAGCATGGGGGTGAGAAGGGAGT
GCCTTTTCGGGTGCAGATTGACACGTTTAAGCAGAATGAGAGTGGGGACTACTCGGAGCATCTACACTCT
GCCAGCTGCCAGATCAAGGTGTTCAAGCCCAAGGGAGCTGATCGGAAACAGAAGACTGACCGGGAAAAGA
TGGAAAAAAGAACGGCTCAAGAGAAGGAGAAATACCAGCCATCCTATGAAACCACCATCCTTACCGAGTG
TTCTCCATGGCCTGACGTCCCCTACCAGGCGAACAACACCCCATCCCCAAGCTACAATGGCTCTCCCAAC
AGCTTTGGCCTCCGTGAAGGTAACAGCTCACCTAATCACCCGGTGGAGCCCTTACCCCTGGGCAGTGATC
ACCTGCTCCCATCAGCCTCTATCCAGGATGCACAGCAGTGGCTGCATCGCAACCGCTTCTCACAATTCTG
CTGGCTCTTTGCCAGCTTCTCAGGTGCTGACCTCCTGAAGATGTCCAGAGATGATTTGGTCCAGGTCTGT
GGCCCTGCAGATGGGATTCGGCTCTTCAATGCCATCAAAGGCAGGAATGTGAGGCCAAAGATGACCATCT
ATGTCTGTCAGGAGCTGGAGCAAAACCAACTACCCTTGCCACAGAAGCAGGATGACAGTGGGGATAACAG
CCTGTGTGTATACCATGCTATCTTCCTGGAAGAGCTGACTACCCTGGAGCTGACTGAGAAGATCGCCAGC
CTGTACAGCATCCCCCCACAGCATATACACCGCGTCTATCGACAGGGTCCCGCTGGCATCCACGTGGTGG
TAAGCAATGAGATGGTTCAGAATTTCCAAGATGAGTCTTGTTTTATCCTCAGCACATTAAAAGCAGAAAG
CAATGATGGCTACCACATCATCCTGAAGTGTGGACTCTGA

Translation (479 aa):
MLFWHTQPEHYNQHNSGSYLRDVLALPIFKQEEPQLSPENGARLPPLQYVLCAATSPAVKLHEETLTYLN
QGQSYEIRLLENRKLGDFQDLNTKYVKSIIRVVFHDRRLQYTEYQQLEGWRWSRPGDRILDIDIPLSVGI
LDPRASPTQLNAVEFLWDPSKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNESGDYSEHLHS
ASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVPYQANNTPSPSYNGSPN
SFGLREGNSSPNHPVEPLPLGSDHLLPSASIQDAQQWLHRNRFSQFCWLFASFSGADLLKMSRDDLVQVC
GPADGIRLFNAIKGRNVRPKMTIYVCQELEQNQLPLPQKQDDSGDNSLCVYHAIFLEELTTLELTEKIAS
LYSIPPQHIHRVYRQGPAGIHVVVSNEMVQNFQDESCFILSTLKAESNDGYHIILKCGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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