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Report for CCDS3573.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3573.2 Public Homo sapiens 4 SDAD1 24 110 108 CCDS HistoryNCBI Gene:55153Re-query CCDS DB by CCDS ID:3573.2Re-query CCDS DB by GeneID:55153See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3573.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000356260.10 ENSP00000348596.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000356260.10Link to Ensembl Protein Viewer:ENSP00000348596.5Re-query CCDS DB by Nucleotide ID:ENST00000356260Re-query CCDS DB by Protein ID:ENSP00000348596
Original member Current member NCBI NM_018115.4 NP_060585.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018115.4Link to Protein Sequence:NP_060585.2Re-query CCDS DB by Nucleotide ID:NM_018115Re-query CCDS DB by Protein ID:NP_060585Link to BLAST:NP_060585.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060585.2 687 Q9NVU7-1 687 100% 0 0

Chromosomal Locations for CCDS 3573.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75950750 75950797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75955975 75956136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75957325 75957409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75957518 75957708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75957847 75957941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75960066 75960192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75961028 75961104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75961211 75961308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75964135 75964211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75965764 75965822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75967277 75967334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75969296 75969399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75970309 75970378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75971357 75971458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75973317 75973391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75974076 75974133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75975744 75975844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75975924 75975995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75977646 75977756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75981372 75981470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75981933 75982037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75990752 75990841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGTCCAACAGAAACAACAACAAGCTTCCCAGCAACCTGCCGCAGTTACAGAATCTAATCAAGCGAGACC
CGCCGGCCTACATCGAGGAGTTTCTACAGCAGTATAATCACTACAAATCCAATGTGGAGATTTTCAAATT
GCAACCAAATAAACCCAGCAAAGAACTAGCAGAGCTGGTGATGTTTATGGCACAGATTAGTCACTGCTAC
CCAGAGTACCTAAGTAATTTTCCTCAAGAGGTGAAAGATCTTCTCTCCTGCAATCATACCGTATTGGATC
CAGATCTGCGAATGACATTTTGCAAAGCTTTGATCTTGCTGAGAAATAAGAATCTCATCAATCCATCAAG
CCTGCTAGAACTCTTCTTTGAACTTTTTCGTTGCCATGATAAACTTCTGCGAAAGACTTTATACACACAT
ATTGTGACTGATATCAAGAATATAAATGCAAAACACAAGAACAATAAAGTGAATGTAGTATTGCAAAATT
TCATGTACACCATGTTAAGAGATAGCAATGCAACCGCAGCCAAGATGTCTTTAGATGTAATGATTGAACT
CTACAGAAGGAACATCTGGAATGATGCAAAAACTGTCAATGTTATCACAACTGCATGTTTCTCTAAGGTC
ACCAAGATATTAGTTGCCGCTTTGACATTCTTTCTTGGGAAAGATGAAGATGAAAAACAGGACAGTGACT
CCGAATCTGAGGATGATGGACCAACAGCAAGAGACCTGCTAGTACAATATGCTACAGGGAAGAAAAGTTC
CAAAAACAAGAAAAAGTTGGAAAAGGCAATGAAAGTGCTCAAGAAACAAAAAAAGAAGAAAAAACCAGAG
GTGTTTAACTTTTCAGCCATTCACTTGATTCATGATCCCCAAGATTTTGCGGAAAAACTACTAAAGCAGC
TTGAGTGCTGTAAGGAGAGGTTTGAAGTGAAGATGATGCTCATGAACCTTATCTCCAGATTGGTGGGAAT
TCATGAGCTTTTCCTCTTCAATTTCTATCCCTTTTTGCAAAGGTTTCTGCAGCCCCACCAAAGAGAAGTA
ACCAAGATCCTTCTGTTTGCTGCACAAGCATCTCATCACCTAGTACCCCCAGAGATTATTCAATCATTGC
TTATGACTGTGGCAAACAATTTTGTTACCGACAAGAACTCTGGAGAAGTCATGACAGTAGGAATCAATGC
TATAAAGGAGATAACAGCTCGATGTCCTCTGGCCATGACTGAAGAACTTCTCCAAGACCTGGCTCAGTAT
AAAACACACAAGGATAAGAATGTAATGATGTCTGCTAGAACTTTGATTCACCTCTTCCGAACACTGAATC
CTCAGATGCTGCAGAAGAAATTCCGGGGTAAGCCTACAGAGGCCTCCATAGAAGCAAGAGTACAAGAATA
TGGAGAATTAGATGCTAAAGATTACATTCCAGGAGCAGAAGTTCTGGAAGTTGAGAAAGAAGAGAATGCT
GAAAATGATGAAGATGGATGGGAAAGTACCAGTCTCAGTGAGGAGGAGGATGCTGATGGTGAATGGATTG
ATGTGCAACACTCTTCCGATGAAGAACAGCAAGAAATCTCCAAGAAGCTGAACAGCATGCCCATGGAGGA
GCGGAAGGCCAAAGCTGCAGCCATCAGCACTAGCCGAGTTTTAACTCAGGAAGACTTCCAGAAAATCCGC
ATGGCCCAAATGAGAAAAGAACTTGATGCTGCCCCCGGGAAATCCCAGAAGAGGAAATACATTGAAATAG
ACAGTGATGAAGAGCCCAGGGGTGAATTACTTTCTCTTCGGGACATTGAACGCCTTCATAAAAAGCCAAA
GTCTGACAAAGAGACAAGACTAGCAACTGCAATGGCTGGAAAGACAGACCGAAAAGAATTTGTGAGGAAG
AAAACCAAAACAAATCCATTTTCCAGTTCGACAAATAAAGAGAAGAAAAAACAGAAGAACTTTATGATGA
TGCGGTATAGCCAGAATGTCCGGTCAAAAAATAAGCGTTCCTTCCGAGAAAAACAGTTGGCACTACGAGA
TGCACTTTTGAAAAAGAGAAAAAGAATGAAGTAA

Translation (687 aa):
MSNRNNNKLPSNLPQLQNLIKRDPPAYIEEFLQQYNHYKSNVEIFKLQPNKPSKELAELVMFMAQISHCY
PEYLSNFPQEVKDLLSCNHTVLDPDLRMTFCKALILLRNKNLINPSSLLELFFELFRCHDKLLRKTLYTH
IVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSNATAAKMSLDVMIELYRRNIWNDAKTVNVITTACFSKV
TKILVAALTFFLGKDEDEKQDSDSESEDDGPTARDLLVQYATGKKSSKNKKKLEKAMKVLKKQKKKKKPE
VFNFSAIHLIHDPQDFAEKLLKQLECCKERFEVKMMLMNLISRLVGIHELFLFNFYPFLQRFLQPHQREV
TKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAMTEELLQDLAQY
KTHKDKNVMMSARTLIHLFRTLNPQMLQKKFRGKPTEASIEARVQEYGELDAKDYIPGAEVLEVEKEENA
ENDEDGWESTSLSEEEDADGEWIDVQHSSDEEQQEISKKLNSMPMEERKAKAAAISTSRVLTQEDFQKIR
MAQMRKELDAAPGKSQKRKYIEIDSDEEPRGELLSLRDIERLHKKPKSDKETRLATAMAGKTDRKEFVRK
KTKTNPFSSSTNKEKKKQKNFMMMRYSQNVRSKNKRSFREKQLALRDALLKKRKRMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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