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Report for CCDS35775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35775.1 Public Mus musculus 1 Nit1 23 108 98 CCDS HistoryNCBI Gene:27045Re-query CCDS DB by CCDS ID:35775.1Re-query CCDS DB by GeneID:27045See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111295.7 ENSMUSP00000106926.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111295.7Link to Ensembl Protein Viewer:ENSMUSP00000106926.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111295Re-query CCDS DB by Protein ID:ENSMUSP00000106926
Original member NCBI NM_012049.2 NP_036179.1 Updated not alive Link to Nucleotide Sequence:NM_012049.2Link to Protein Sequence:NP_036179.1Re-query CCDS DB by Nucleotide ID:NM_012049Re-query CCDS DB by Protein ID:NP_036179
Current member NCBI NM_012049.3 NP_036179.1 Accepted alive Link to Nucleotide Sequence:NM_012049.3Link to Protein Sequence:NP_036179.1Re-query CCDS DB by Nucleotide ID:NM_012049Re-query CCDS DB by Protein ID:NP_036179Link to BLAST:NP_036179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036179.1 323 Q8VDK1-1 323 100% 0 0

Chromosomal Locations for CCDS 35775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171342531 171342797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171343438 171343563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171343694 171343827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171344064 171344167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171344288 171344539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171344914 171345000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171345568 171345569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGCTGGGCTTCATCACCAGGCCTCCTCACCAACTCCTGTGTACCGGATACCGATTACTTCGAACCCCAG
TACTTTGTACTCAGCCCAGGCCCAGAACCATGTCCTCATCAACTTCCTGGGAGCTGCCCCTGGTGGCTGT
GTGCCAGGTAACATCAACACCAAACAAGCAAGAGAACTTTAAAACATGTGCTGAGTTGGTTCAAGAGGCT
GCCAGACTGGGTGCTTGCCTGGCCTTTCTGCCTGAGGCATTTGACTTTATTGCACGAAACCCTGCCGAGA
CATTACTCCTGTCCGAACCACTGAATGGGGATCTTTTGGGCCAATATAGCCAGCTTGCCAGGGAATGTGG
AATCTGGCTGTCCTTGGGCGGTTTCCACGAGCGTGGCCAAGACTGGGAGCAGAATCAGAAAATCTACAAT
TGTCATGTGCTTTTGAACAGCAAGGGATCAGTAGTGGCCAGTTACAGGAAGACACATCTGTGCGATGTAG
AGATCCCAGGTCAGGGGCCGATGAGAGAAAGCAACTATACCAAGCCTGGAGGCACTCTTGAGCCACCTGT
CAAGACACCGGCTGGCAAGGTTGGTCTAGCAATCTGTTATGACATGCGGTTCCCTGAACTTTCTTTGAAA
TTGGCTCAAGCTGGGGCAGAAATACTTACTTATCCTTCAGCCTTTGGATCTGTTACAGGTCCAGCCCACT
GGGAGGTGCTGCTGCGGGCCCGCGCCATTGAATCTCAGTGCTATGTAATAGCAGCAGCGCAGTGTGGACG
CCACCATGAAACAAGAGCAAGTTATGGCCATAGCATGGTGGTTGACCCGTGGGGCACAGTGGTGGCCCGC
TGCTCCGAGGGACCAGGCCTCTGCCTTGCTCGAATTGATCTCCACTTTCTACAACAGATGCGCCAACACC
TGCCTGTGTTCCAGCACCGCAGACCTGACCTCTATGGCAGTCTGGGTCATCCACTCTCTTAA

Translation (323 aa):
MLGFITRPPHQLLCTGYRLLRTPVLCTQPRPRTMSSSTSWELPLVAVCQVTSTPNKQENFKTCAELVQEA
ARLGACLAFLPEAFDFIARNPAETLLLSEPLNGDLLGQYSQLARECGIWLSLGGFHERGQDWEQNQKIYN
CHVLLNSKGSVVASYRKTHLCDVEIPGQGPMRESNYTKPGGTLEPPVKTPAGKVGLAICYDMRFPELSLK
LAQAGAEILTYPSAFGSVTGPAHWEVLLRARAIESQCYVIAAAQCGRHHETRASYGHSMVVDPWGTVVAR
CSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLYGSLGHPLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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