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Report for CCDS35877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35877.1 Public Mus musculus 10 Tpd52l1 23 108 98 CCDS HistoryNCBI Gene:21987Re-query CCDS DB by CCDS ID:35877.1Re-query CCDS DB by GeneID:21987See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000305.6 ENSMUSP00000000305.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000305.6Link to Ensembl Protein Viewer:ENSMUSP00000000305.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000000305Re-query CCDS DB by Protein ID:ENSMUSP00000000305
Original member NCBI NM_009413.2 NP_033439.1 Updated not alive Link to Nucleotide Sequence:NM_009413.2Link to Protein Sequence:NP_033439.1Re-query CCDS DB by Nucleotide ID:NM_009413Re-query CCDS DB by Protein ID:NP_033439
Current member NCBI NM_009413.3 NP_033439.1 Accepted alive Link to Nucleotide Sequence:NM_009413.3Link to Protein Sequence:NP_033439.1Re-query CCDS DB by Nucleotide ID:NM_009413Re-query CCDS DB by Protein ID:NP_033439Link to BLAST:NP_033439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033439.1 204 O54818 204 100% 0 0

Chromosomal Locations for CCDS 35877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 31332841 31332969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31338185 31338245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31341140 31341178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31346611 31346712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31357872 31358020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31379215 31379330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 31445712 31445730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGAGGCGCAGGCACAAGGCTTGTTGGAGACGGAACCGCTACAAGGAAGAGATGGGGATGCAGTAGGCA
GTGCTGACTTCTCTAGCATGCTCTCTGAGGAGGAGAAGGAAGAGCTAAAGGCAGAGTTAATTCAGCTAGA
AGACGAAATCACAACATTACGACAAGTTTTGTCAGCAAAAGAAAGACATCTGGTTGAGATCAAACAGAAA
CTCGGCATGAATCTGATGAATGAGTTAAAGCAGAACTTCAGCAGGAGCTGGCACGACATGCAGACCACGA
CTGCGTACAAGAAAACGCACGAAACCCTGAGCCACGCAGGGCAGAAGGCAACAGCAGCTTTCAATAACGT
GGGAACTGCCATCAGCAAGAAGTTTGGAGATATGAGGTACTCCATCCGCCATTCCATAAGTATGCCTGCC
ATGAGGAATTCTTCTACTTTCAAATCATTTGAGGAGAGGGTTGAGACAACTGTTGCAAGCCTCAAGACGA
AAGTAGGTGGGACAAACCACGGTGGTGGCAGTTTTGAGGAGGTCCTGAACTCCACAGCACACGCCAGCTC
ACAGAATGCTTCAGCAGGCTCCCGGCAGACCAAGGACGAGGAGCTGCAGTGCTAG

Translation (204 aa):
MEAQAQGLLETEPLQGRDGDAVGSADFSSMLSEEEKEELKAELIQLEDEITTLRQVLSAKERHLVEIKQK
LGMNLMNELKQNFSRSWHDMQTTTAYKKTHETLSHAGQKATAAFNNVGTAISKKFGDMRYSIRHSISMPA
MRNSSTFKSFEERVETTVASLKTKVGGTNHGGGSFEEVLNSTAHASSQNASAGSRQTKDEELQC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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