NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS35956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35956.1 Public Mus musculus 10 Icosl 23 108 98 CCDS HistoryNCBI Gene:50723Re-query CCDS DB by CCDS ID:35956.1Re-query CCDS DB by GeneID:50723See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 35956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105393.2 ENSMUSP00000101032.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105393.2Link to Ensembl Protein Viewer:ENSMUSP00000101032.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105393Re-query CCDS DB by Protein ID:ENSMUSP00000101032
Original member Current member NCBI NM_015790.3 NP_056605.1 Accepted alive Link to Nucleotide Sequence:NM_015790.3Link to Protein Sequence:NP_056605.1Re-query CCDS DB by Nucleotide ID:NM_015790Re-query CCDS DB by Protein ID:NP_056605Link to BLAST:NP_056605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056605.1 322 Q9JHJ8-1 322 100% 0 0

Chromosomal Locations for CCDS 35956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78069525 78069535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78071161 78071279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78071738 78072091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78073707 78074000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78075205 78075354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78077144 78077173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78077893 78077903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGCAGCTAAAGTGTCCCTGTTTTGTGTCCTTGGGAACCAGGCAGCCTGTTTGGAAGAAGCTCCATGTTT
CTAGCGGGTTCTTTTCTGGTCTTGGTCTGTTCTTGCTGCTGTTGAGCAGCCTCTGTGCTGCCTCTGCAGA
GACTGAAGTCGGTGCAATGGTGGGCAGCAATGTGGTGCTCAGCTGCATTGACCCCCACAGACGCCATTTC
AACTTGAGTGGTCTGTATGTCTATTGGCAAATCGAAAACCCAGAAGTTTCGGTGACTTACTACCTGCCTT
ACAAGTCTCCAGGGATCAATGTGGACAGTTCCTACAAGAACAGGGGCCATCTGTCCCTGGACTCCATGAA
GCAGGGTAACTTCTCTCTGTACCTGAAGAATGTCACCCCTCAGGATACCCAGGAGTTCACATGCCGGGTA
TTTATGAATACAGCCACAGAGTTAGTCAAGATCTTGGAAGAGGTGGTCAGGCTGCGTGTGGCAGCAAACT
TCAGTACACCTGTCATCAGCACCTCTGATAGCTCCAACCCGGGCCAGGAACGTACCTACACCTGCATGTC
CAAGAATGGCTACCCAGAGCCCAACCTGTATTGGATCAACACAACGGACAATAGCCTAATAGACACGGCT
CTGCAGAATAACACTGTCTACTTGAACAAGTTGGGCCTGTATGATGTAATCAGCACATTAAGGCTCCCTT
GGACATCTCGTGGGGATGTTCTGTGCTGCGTAGAGAATGTGGCTCTCCACCAGAACATCACTAGCATTAG
CCAGGCAGAAAGTTTCACTGGAAATAACACAAAGAACCCACAGGAAACCCACAATAATGAGTTAAAAGTC
CTTGTCCCCGTCCTTGCTGTACTGGCGGCAGCGGCATTCGTTTCCTTCATCATATACAGACGCACGCGTC
CCCACCGAAGCTATACAGGACCCAAGACTGTACAGCTTGAACTTACAGACCACGCCTGA

Translation (322 aa):
MQLKCPCFVSLGTRQPVWKKLHVSSGFFSGLGLFLLLLSSLCAASAETEVGAMVGSNVVLSCIDPHRRHF
NLSGLYVYWQIENPEVSVTYYLPYKSPGINVDSSYKNRGHLSLDSMKQGNFSLYLKNVTPQDTQEFTCRV
FMNTATELVKILEEVVRLRVAANFSTPVISTSDSSNPGQERTYTCMSKNGYPEPNLYWINTTDNSLIDTA
LQNNTVYLNKLGLYDVISTLRLPWTSRGDVLCCVENVALHQNITSISQAESFTGNNTKNPQETHNNELKV
LVPVLAVLAAAAFVSFIIYRRTRPHRSYTGPKTVQLELTDHA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH