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Report for CCDS3601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3601.1 Public Homo sapiens 4 PLAC8 24 110 108 CCDS HistoryNCBI Gene:51316Re-query CCDS DB by CCDS ID:3601.1Re-query CCDS DB by GeneID:51316See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3601.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311507.9 ENSP00000309509.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311507.9Link to Ensembl Protein Viewer:ENSP00000309509.4Re-query CCDS DB by Nucleotide ID:ENST00000311507Re-query CCDS DB by Protein ID:ENSP00000309509
Original member Current member EBI ENST00000426923.2 ENSP00000399700.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426923.2Link to Ensembl Protein Viewer:ENSP00000399700.2Re-query CCDS DB by Nucleotide ID:ENST00000426923Re-query CCDS DB by Protein ID:ENSP00000399700
Original member Current member EBI ENST00000411416.6 ENSP00000412230.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411416.6Link to Ensembl Protein Viewer:ENSP00000412230.2Re-query CCDS DB by Nucleotide ID:ENST00000411416Re-query CCDS DB by Protein ID:ENSP00000412230
Original member Current member EBI ENST00000505406.5 ENSP00000422526.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505406.5Link to Ensembl Protein Viewer:ENSP00000422526.1Re-query CCDS DB by Nucleotide ID:ENST00000505406Re-query CCDS DB by Protein ID:ENSP00000422526
Original member Current member NCBI NM_001130715.2 NP_001124187.1 Accepted alive Link to Nucleotide Sequence:NM_001130715.2Link to Protein Sequence:NP_001124187.1Re-query CCDS DB by Nucleotide ID:NM_001130715Re-query CCDS DB by Protein ID:NP_001124187Link to BLAST:NP_001124187.1
Original member Current member NCBI NM_001130716.2 NP_001124188.1 Accepted alive Link to Nucleotide Sequence:NM_001130716.2Link to Protein Sequence:NP_001124188.1Re-query CCDS DB by Nucleotide ID:NM_001130716Re-query CCDS DB by Protein ID:NP_001124188Link to BLAST:NP_001124188.1
Original member Current member NCBI NM_016619.3 NP_057703.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016619.3Link to Protein Sequence:NP_057703.1Re-query CCDS DB by Nucleotide ID:NM_016619Re-query CCDS DB by Protein ID:NP_057703Link to BLAST:NP_057703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124187.1 115 Q9NZF1 115 100% 0 0
NP_001124188.1 115 Q9NZF1 115 100% 0 0
NP_057703.1 115 Q9NZF1 115 100% 0 0

Chromosomal Locations for CCDS 3601.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83094687 83094791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83104896 83105020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83107804 83107921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGCAAGCTCAGGCGCCGGTGGTCGTTGTGACCCAACCTGGAGTCGGTCCCGGTCCGGCCCCCCAGAACT
CCAACTGGCAGACAGGCATGTGTGACTGTTTCAGCGACTGCGGAGTCTGTCTCTGTGGCACATTTTGTTT
CCCGTGCCTTGGGTGTCAAGTTGCAGCTGATATGAATGAATGCTGTCTGTGTGGAACAAGCGTCGCAATG
AGGACTCTCTACAGGACCCGATATGGCATCCCTGGATCTATTTGTGATGACTATATGGCAACTCTTTGCT
GTCCTCATTGTACTCTTTGCCAAATCAAGAGAGATATCAACAGAAGGAGAGCCATGCGTACTTTCTAA

Translation (115 aa):
MQAQAPVVVVTQPGVGPGPAPQNSNWQTGMCDCFSDCGVCLCGTFCFPCLGCQVAADMNECCLCGTSVAM
RTLYRTRYGIPGSICDDYMATLCCPHCTLCQIKRDINRRRAMRTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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