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Report for CCDS3623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3623.1 Public Homo sapiens 4 DMP1 24 110 108 CCDS HistoryNCBI Gene:1758Re-query CCDS DB by CCDS ID:3623.1Re-query CCDS DB by GeneID:1758See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3623.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339673.11 ENSP00000340935.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339673.11Link to Ensembl Protein Viewer:ENSP00000340935.6Re-query CCDS DB by Nucleotide ID:ENST00000339673Re-query CCDS DB by Protein ID:ENSP00000340935
Original member Current member NCBI NM_004407.4 NP_004398.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004407.4Link to Protein Sequence:NP_004398.1Re-query CCDS DB by Nucleotide ID:NM_004407Re-query CCDS DB by Protein ID:NP_004398Link to BLAST:NP_004398.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004398.1 513 Q13316-1 513 100% 0 0

Chromosomal Locations for CCDS 3623.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87656493 87656546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87657032 87657079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87659220 87659252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87659431 87659478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87661962 87663320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGAAGATCAGCATCCTGCTCATGTTCCTTTGGGGATTATCCTGTGCTCTCCCAGTAACCAGGTATCAAA
ATAATGAATCTGAGGATTCTGAAGAATGGAAGGGTCATTTGGCTCAGGCACCAACACCACCCTTGGAGAG
CAGTGAGTCATCAGAAGGCAGTAAAGTTAGCTCAGAGGAACAGGCAAATGAAGACCCCAGTGACAGCACT
CAGTCAGAGGAGGGCCTGGGCTCTGATGATCATCAATACATTTATAGGCTAGCTGGTGGCTTCTCCAGGA
GCACAGGAAAAGGAGGAGATGATAAAGATGACGATGAAGATGACAGTGGAGATGACACCTTTGGTGACGA
TGACAGTGGCCCAGGGCCCAAAGACAGACAAGAAGGAGGAAACTCCAGACTGGGAAGTGATGAGGACTCT
GATGACACCATACAAGCCAGTGAAGAGAGTGCCCCACAAGGGCAAGACAGTGCCCAAGATACCACCAGTG
AGAGCAGGGAACTTGACAATGAGGACCGGGTGGACAGCAAGCCTGAGGGAGGTGACTCCACTCAAGAGAG
TGAGAGTGAAGAGCACTGGGTGGGAGGTGGCAGTGATGGGGAGAGCAGCCATGGAGACGGCTCCGAGTTG
GACGATGAGGGAATGCAGAGTGATGACCCAGAGAGCATCAGGAGTGAAAGGGGAAACTCCAGAATGAACA
GTGCAGGCATGAAATCAAAAGAATCTGGAGAAAACAGTGAGCAAGCAAACACTCAAGATTCAGGTGGCAG
CCAATTGCTGGAGCATCCCAGTAGGAAAATTTTTAGGAAGTCTCGCATCTCAGAGGAAGATGACAGAAGC
GAGCTTGATGACAACAACACAATGGAAGAAGTCAAGAGTGACTCTACAGAAAACAGCAACTCCAGAGACA
CTGGCCTCAGCCAACCCAGGAGAGACAGCAAGGGTGACTCTCAAGAAGACAGCAAGGAGAATCTGTCCCA
GGAAGAGAGCCAAAACGTAGATGGTCCCAGCAGTGAGTCCAGCCAAGAGGCCAACCTGTCATCTCAAGAG
AACAGCAGTGAGTCTCAGGAAGAGGTGGTGAGTGAGTCCAGGGGAGATAACCCCGACCCCACAACTAGTT
ATGTAGAAGACCAGGAAGACAGTGACTCCAGCGAGGAGGACAGCTCGCACACACTCTCCCACTCAAAAAG
TGAATCCAGAGAGGAGCAAGCAGACAGCGAATCCAGTGAGAGCCTCAACTTCTCAGAGGAAAGCCCGGAG
TCCCCTGAGGATGAGAACAGCTCCAGCCAGGAGGGCCTCCAGTCTCACAGCAGCTCAGCAGAGAGTCAGA
GCGAGGAAAGCCATTCTGAGGAAGACGACAGTGACTCTCAAGACAGCAGCAGATCCAAAGAAGATAGCAA
CTCCACGGAGAGCAAATCAAGCAGTGAGGAAGATGGCCAGTTGAAAAACATTGAGATAGAGAGCCGGAAA
TTAACAGTTGATGCCTATCACAACAAACCCATTGGGGACCAAGATGACAATGACTGCCAAGACGGCTATT
AG

Translation (513 aa):
MKISILLMFLWGLSCALPVTRYQNNESEDSEEWKGHLAQAPTPPLESSESSEGSKVSSEEQANEDPSDST
QSEEGLGSDDHQYIYRLAGGFSRSTGKGGDDKDDDEDDSGDDTFGDDDSGPGPKDRQEGGNSRLGSDEDS
DDTIQASEESAPQGQDSAQDTTSESRELDNEDRVDSKPEGGDSTQESESEEHWVGGGSDGESSHGDGSEL
DDEGMQSDDPESIRSERGNSRMNSAGMKSKESGENSEQANTQDSGGSQLLEHPSRKIFRKSRISEEDDRS
ELDDNNTMEEVKSDSTENSNSRDTGLSQPRRDSKGDSQEDSKENLSQEESQNVDGPSSESSQEANLSSQE
NSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREEQADSESSESLNFSEESPE
SPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEEDGQLKNIEIESRK
LTVDAYHNKPIGDQDDNDCQDGY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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