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Report for CCDS36381.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36381.1 Public Mus musculus 11 Tnrc6c 23 108 98 CCDS HistoryNCBI Gene:217351Re-query CCDS DB by CCDS ID:36381.1Re-query CCDS DB by GeneID:217351See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36381.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026658.12 ENSMUSP00000026658.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026658.12Link to Ensembl Protein Viewer:ENSMUSP00000026658.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026658Re-query CCDS DB by Protein ID:ENSMUSP00000026658
Original member Current member EBI ENSMUST00000106344.7 ENSMUSP00000101951.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106344.7Link to Ensembl Protein Viewer:ENSMUSP00000101951.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106344Re-query CCDS DB by Protein ID:ENSMUSP00000101951
Original member Current member NCBI NM_198022.2 NP_932139.2 Accepted alive Link to Nucleotide Sequence:NM_198022.2Link to Protein Sequence:NP_932139.2Re-query CCDS DB by Nucleotide ID:NM_198022Re-query CCDS DB by Protein ID:NP_932139Link to BLAST:NP_932139.2

Chromosomal Locations for CCDS 36381.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 117700762 117700824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117702379 117702400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117714126 117714452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117720950 117723550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117732168 117732380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117733610 117733776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117735972 117736052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117738291 117738348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117739867 117740009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117741645 117741818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117742927 117743064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117747177 117747296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117749244 117749327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117749577 117749817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117752977 117753144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117755331 117755522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117755963 117756106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117757937 117758131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117758904 117758974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117759624 117759763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 117760491 117760851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5703 nt):
ATGGAAGAAAAGAAAAAGAAAAAGCAGGAAGACAAGAAAAAGAAGGAAGGTGCTCAGAAAAAGGCTGCTG
ATCAAAAAACCAAAGTGCCAGAACTTACTAAGACCTGTTCAAGCCAGCCCCAACCTGCCGGTACCAGTCC
CAGTACTTCCACCAGCACTATTTCTAGCGGCAGCAATGGCAAACGTGCATCTGCCTGTGGCCAGCAGCCA
GCTGCATCCCGTTACCTGCCTCGGGAGGTGCCTCCACGCTTTCGCCAGCAAGAACAGAAGCAGCTGTTAA
AGAGAGGCCAGCCATTGCCCACAGGGGGTCTGACCAGTTTGAACTCAGCACAGGCTGCTGGACCTGCAGG
GGCCAGCCCTCCTCCCCTCCCTGGAGCTGGGGCACAGCAACATCCCAGCAAGCTCCAACAAGATCTTGGT
CACAGTGGATTGGTAGATCATTATGAAAATTCCCACTGGGGACAGCATCCCTCTTACAGAAGTGAAGCCA
ACTGCAGCTGGGATAAAGTGATAATAGACAGGACTGAGCCGGAGGTGTGGCCGTCCATCCCAGTAACTGA
GACGGAATCTGCCTCAGAATGTCCTACCGACACTGACTCTGCCTCCAACTGTGGCTCAGAGAACAGTAGC
ATGGCTACAGGGAGTGCCCAGAGCAGCTTCCCGAGCCACCTGAAGAAGACAAACGGCAGTCATGGCACCA
ATGGCGCACTCGTCCAAAGCCCTTCTAACCAGAGTGCCCTTGGGGCAGGAGGAACCAATGGGAACGGGGG
CGTGGCCAGAGTGTGGGGTGTAGCCACAAGCTCCAGCTCTGGCCTGGCTCACTGCTCTGTTGGTGGTGGA
GATGGGAAAATGGACAACATGATCGGAGATGGGAGAAGTCAGAATTGTTGGGGTGCTTCTAACTCCAATG
CGGGCATTAATCTCAACCTTAATCCAAATGCCAACCCAGCTGCCTGGCCTGTACTCGGGCATGAAGGAAC
TGTGGCAACAGGCAACCCTTCCAGTATTTGCAGTCCAGTCAGTGCCATAGGTCAGAATATGGGCAGCCAG
AATGGGAACCCAGTGGGCGCCCTAGGTGCCTGGGGAAACTTGCTGCCCCAAGAGAGCGCAGAACCACAGA
CATCCACTTCTCAGAATGTGTCTTTCAGCGTACAACCTCAGAACCTTAACACTGATGGACCAAATAACAC
TAACCCCATGAACTCTTCACCAAACCCTATCAATGCAATGCAGACAAACGGACTGCCAAACTGGGGCATG
GCTGTTGGTATGGGGGCCATCATCCCACCCCACCTGCAAGGCCTTCCTGGTGCTAACGGATCATCAGTCT
CTCAAGGCAGTGGGAGTGGTGGGGAAGGAATGGGCAGTTCTGTGTGGGGACTGTCCCCTGGTAACCCTGC
CACAGGAAGTACCAATTGTGGGTTCAGTCAAGGGAATGGAGACACTGTGAACTCAGCATTAAGTGCTAAG
CAGAACGGATCCAGCAGTGCTGTGCAGAAGGAAGGGAATGGAGGGAACGCCTGGGACTCAGGGCCTCCTG
CAGGGCCTGGCATCCTTGCCTGGGGAAGGGGCAGTGGCACCAATGGCATTGGTAATATCCATTCAGGAGC
TTGGGGCCATCCCAGCCGAAGTTCTTCTAATGGTGTGAATGGGGAGTGGGGGAAGCCCCCAAACCAGCAT
TCCAGTAGTGACATCAGTGGGAAAGGATCAACAGGGTGGGACAGTGCCAGTGCTGCCAGCCAGACCCCTG
CCCTGCAGCCTGGCAGTGAACACATGAACTCGTGGGCCAAAGCCACATCTTCTGGAACTACAGCAAGTGA
AGGAAGCAGTGATGGGTCCGGCAATCACAATGAAGGAAGCACTGGGAGGGAAGGGACAGGAGAGGGCCGG
AGGCGAGACAAAGGGGTTCTAGACCAAGGGCACATCCAGTTGCCAAGGAATGACCTTGACCCAAGAGTTC
TGTCTAACAGTGGTTGGGGACAGACTCCCGTAAAGCAAAACACTGCCTGGGAATTTGAAGAGTCCCCTAG
GTCTGAAAGGAAAAATGACAATGGGACAGAGGCCTGGGGTAGTATAGCTACTCAGCCTTCAAACTCAGGG
GGGAAGACTGATGGGTCCATCATGAACAGTACAAATACCTCTTCAGTATCGGGGTGGGTCAGCTCACCAC
CTGCCGCCGTGCCAGCAAACACAAGCTGGGGAGACAGCAACAACAAAGCGCCAAGTGGCCCAGGAGTTTG
GGGGGACTCAATAAGCTCTACTGCTGTTAACAATGCTGCTGCCACCAAGAGTGGCCATGCTTGGAGTGGG
ACTGTAAACCAAGAGGACAAATCACCCACCTGGGGTGAGCCTCAGAAGCCCAAATCCCAAAACTGGGGAG
ATGGACAAAGAGCAAACCCAGCCTGGAGCACAGGGGCAGGAGACTGGGCAGATTCATCATCTGTCCTTGG
ACATCTAGGGGATGGAAAGAAAAATGGATCTGGATGGGATGCTGATGGTAATAGGTCAGGGTCTGGTTGG
AATGATGCCACGAGATGTGGGACCAGTGGCTGGGGCAGTGGCACAAATGCTAAGGTGAATCCAGGTACAA
ACTGGGGGGAGTCTCTCAAGCCTGGTCCCCAGCAGAACTGGGCTCATAAGCCCCAAGACAACAATGTGAG
TAACTGGGGAGGAGCTGCTTCTGTTAAGCAGACAGGGACAGGGTGGATTGGGGGGCCACTGCCAGTCAAG
CAGAAGGACAGCAGTGAGGCGACTGGCTGGGAGGAGCCTTCCCCACCCTCCATCCGACGCAAAATGGAAA
TTGATGATGGTACCTCAGCTTGGGGGGACCCAAGCACCTACAACAATAAAACTGTAAACATGTGGGACAG
AAACAATCCAGTCATCCAGAGCAGTACCACAGCCCCTGCCACCCCCACGACCCCCACCTCGAGCAGCACC
ACACACCGGGCCGAGACGCCGCCTTCACACCAGGCTGGCACTCAGCTGAATCGGTCACCACTGCTCGGGC
CAGTTTCATCCGGCTGGGGAGAGATGCCCAGTGTTCACTCCAAGGCCGAGAACTCCTGGGGAGAGCCATC
TTCCCCTTGTACCCTGGTGGACAATGGCACAGCAGCGTGGGGGAAGCCTCCCAGCAGTGGCAGTGGGTGG
GATCATCCTGCTGAGCCGGTGGTGCCATTTGGAAGAGCCAGCGCTCCTGCTGCCGCCCCAGCCCTGTGCA
AACCAGCTTCCAAATCTATGCAAGAAGGCTGGGGCAGCGGTGCGGATGAAATGAACCTGGGCACCAGCCA
GTGGGAGGATGAGGACGGGGACATGTGGAACAACGCTGCCTCCCAAGAAAGCAGCTCATCCTGCAGCTCC
TGGGGCAACACCTCAAAAAAAGGACTTCAGAAGGGCATGAAGACTCCTGGCAAGCAGGATGAGGCCTGGA
TCATGAGCCGGCTGATCAAACAACTCACAGACATGGGCTTCCCGAGAGAGCCAGCCGAAGAGGCCTTGAA
AAGCAACAGTATGAACCTTGACCAGGCCATGAGTGCTCTGCTGGAAAAGAAGGTGGACATGGACAAACGT
GGACTGGGAATGACCGACTACAATGGAATGGTCACCAAACCCCTCGGCTGCCGCCCACCAATCTCCAAAG
AGTCTTCCATGGACCGCCCCACCTTCCTTGACAAGCTCACCCTTTCTTTCTCCAATCAGGATGGCGGCCT
CGTGGAAGAGCCCACGACTTCACCGTTTTTGCCTTCCCCAAGCCTGAAGCTCCCCCTTTCCAACAGTGCA
CTCCCCAGTCAGGCCCTGGGTGGGGTTGCCTCAGGGCTGGGCATGCAAAACTTGAACTCTTCTAGACAGA
TCCCGAGTGGCAATCTGGGTGTGTTTGGCAATAGCGGAGCAGCACAAGCCAGGACCATGCAGCAGCCGCC
AGTGCAGCCTCTTAATTCCTCCCAGCCCAGCCTCCGCGCTCAAGTGCCTCAGTTTCTATCCCCTCAGGTT
CAAGCACAGCTTTTGCAGTTTGCAGCAAAAAACATTGGTCTCAGCCCTGCACTATTAACCTCGCCAATTA
ACCCTCAGCATATGACGATGTTGAACCAGCTCTATCAGCTGCAGCTGGCATACCAACGTTTACAAATCCA
GCAGCAGATGTTACAGGCCCAGCGGAATGTTTCCGGACCCATGAGGCAACAGGAGCAGCAAGTTGCGCGC
ACAATCACTAATCTGCAGCAGCAGATCCAGCAGCACCAGCGCCAGCTGGCCCAGGCCCTGCTTGTAAAGC
AGCCACCACCTCCGCCACCCCCGCCGCACCTGTCTCTGCACCCCTCTGCAGGCAAATCGGGCATGGAGAG
CTTCCCCCCTCCCCCCCAGGCTCCCGGCCTTCCCGACCTGCAGACCAAAGAGCAGCAGTCTTCACCCAAC
ACCTTTGCTCCTTATCCTCTTGCTGGATTGAACCCGAACATGAATGTCAACAGCATAGACATGAGCAGTG
GCTTGTCTGTGAAGGACCCGTCGCAGTCCCAGTCACGCCTGCCTCAGTGGACACATCCCAACTCCATGGG
TAACTTGTCTAGTGCTGCTTCTCCCCTGGACCAGAATCCTAGCAAGCATGGTGCTATCCCTGGAGGTCTA
AGCATCGGGCCTCCAGGTAAGTCCTCCATTGATGACTCTTACGGCCGGTACGATTTAATTCAGAACAGTG
AGTCACCAGCCAGTCCTCCCGTAGCTGTTCCCCATAGCTGGTCACGTGCCAAATCTGACAGTGATAAAAT
CTCAAATGGCTCCAGCATCAGCTGGCCCCCAGAATTCCACCCTGGAGTTCCATGGAAAGGACTTCAGAAC
ATTGACCCTGAGAATGACCCTGATGTCACGCCTGGCAGTGTCCCTACAGGACCTACCATCAACACCACCA
TCCAGGATGTCAACCGCTACCTCCTCAAGAGTGGAGGTAAGCTGTCTGATATTAAATCAACATGGTCCTC
AGGCCCAGCCTCTCACACGCAAGCCTCTCTGTCTCATGAGCTGTGGAAGGTACCCAGAAACACTACTGCA
CCCACCAGGCCGCCTCCAGGCTTAGCCAATCCCAAGCCTTCCTCCACCTGGGGCACCAGCCCCCTCGGCT
GGACCAGCTCCTACTCCTCGGGTTCTGCATGGAGCACTGACACCTCAGGAAGAACAAGCAGCTGGCTCGT
TCTGCGCAATCTCACACCCCAGATCGATGGTTCTACACTTCGGACGCTGTGTCTGCAGCATGGACCTCTC
ATCACATTCCACCTGAACCTAACCCAGGGCAACGCTGTAGTCCGCTACAGTTCTAAGGAAGAAGCCGCCA
AGGCCCAGAAGTCTCTGCACATGTGTGTACTGGGAAACACCACCATCTTGGCTGAGTTTGCCGGGGAAGA
AGAAGTGAACCGGTTCCTGGCCCAAGGCCAAGCCCTCCCACCCACCTCCAGCTGGCAGTCCAGCAGCGGG
GGCAGCCAGCCCAGACTGGGCACCTCGGGCAGCACCCATGGCCTAGTGCGCAGCGACACTGCCCACTGGA
ACACCCCATGCCTGAGTGGCAAAGGCAGCAGTGAGCTGCTGTGGGGTGGGGTCCCCCAGTACTCCAGCAG
CCTGTGGGGCCCGCCCAGTGCTGAGGACGCCAGAGTGATCGGCAGCCCCACGCCTCTCAACACTCTGCTG
CCTGGGGACCTGCTCAGCGGCGAGTCCATCTAG

Translation (1900 aa):
MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNGKRASACGQQP
AASRYLPREVPPRFRQQEQKQLLKRGQPLPTGGLTSLNSAQAAGPAGASPPPLPGAGAQQHPSKLQQDLG
HSGLVDHYENSHWGQHPSYRSEANCSWDKVIIDRTEPEVWPSIPVTETESASECPTDTDSASNCGSENSS
MATGSAQSSFPSHLKKTNGSHGTNGALVQSPSNQSALGAGGTNGNGGVARVWGVATSSSSGLAHCSVGGG
DGKMDNMIGDGRSQNCWGASNSNAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNMGSQ
NGNPVGALGAWGNLLPQESAEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGNGDTVNSALSAK
QNGSSSAVQKEGNGGNAWDSGPPAGPGILAWGRGSGTNGIGNIHSGAWGHPSRSSSNGVNGEWGKPPNQH
SSSDISGKGSTGWDSASAASQTPALQPGSEHMNSWAKATSSGTTASEGSSDGSGNHNEGSTGREGTGEGR
RRDKGVLDQGHIQLPRNDLDPRVLSNSGWGQTPVKQNTAWEFEESPRSERKNDNGTEAWGSIATQPSNSG
GKTDGSIMNSTNTSSVSGWVSSPPAAVPANTSWGDSNNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSG
TVNQEDKSPTWGEPQKPKSQNWGDGQRANPAWSTGAGDWADSSSVLGHLGDGKKNGSGWDADGNRSGSGW
NDATRCGTSGWGSGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGAASVKQTGTGWIGGPLPVK
QKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYNNKTVNMWDRNNPVIQSSTTAPATPTTPTSSST
THRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPSVHSKAENSWGEPSSPCTLVDNGTAAWGKPPSSGSGW
DHPAEPVVPFGRASAPAAAPALCKPASKSMQEGWGSGADEMNLGTSQWEDEDGDMWNNAASQESSSSCSS
WGNTSKKGLQKGMKTPGKQDEAWIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKR
GLGMTDYNGMVTKPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSA
LPSQALGGVASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQQPPVQPLNSSQPSLRAQVPQFLSPQV
QAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPMRQQEQQVAR
TITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSAGKSGMESFPPPPQAPGLPDLQTKEQQSSPN
TFAPYPLAGLNPNMNVNSIDMSSGLSVKDPSQSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGL
SIGPPGKSSIDDSYGRYDLIQNSESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQN
IDPENDPDVTPGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTTA
PTRPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPL
ITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSG
GSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWGGVPQYSSSLWGPPSAEDARVIGSPTPLNTLL
PGDLLSGESI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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