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Report for CCDS37041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37041.1 Public Mus musculus 15 Spef2 23 108 98 CCDS HistoryNCBI Gene:320277Re-query CCDS DB by CCDS ID:37041.1Re-query CCDS DB by GeneID:320277See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37041.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041840.13 ENSMUSP00000035762.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041840.13Link to Ensembl Protein Viewer:ENSMUSP00000035762.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041840Re-query CCDS DB by Protein ID:ENSMUSP00000035762
Original member Current member NCBI NM_177123.4 NP_796097.2 Accepted alive Link to Nucleotide Sequence:NM_177123.4Link to Protein Sequence:NP_796097.2Re-query CCDS DB by Nucleotide ID:NM_177123Re-query CCDS DB by Protein ID:NP_796097Link to BLAST:NP_796097.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796097.2 875 Q8C9J3-2 875 100% 0 0

Chromosomal Locations for CCDS 37041.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 9663066 9663226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9667134 9667291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9668790 9668901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9676287 9676543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9679310 9679413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9681082 9681134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9682611 9682668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9684812 9684963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9687761 9687980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9704373 9704541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9713101 9713288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9716332 9716520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9717451 9717637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9723594 9723658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9725115 9725255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9729617 9729869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9740512 9740614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 9748712 9748769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGTCGGAAATCCTGTGCCAGTGGCTCAACCAGGAGTTGAGGGTGTCCCGGACCGTGAGTCCCAAGTCAT
TTGCAAAGGCATTTTCTAATGGCTATCTAATTGGAGAAGTTCTGTTCAAGTTTGAACTTCAGAGTGATTT
TGCAGAATTTTCAGAGAGCAGGGGTTCAACAGCCAAGCTTAACAATTTCTCCCGCTTGCAACCAACACTT
CACCTGCTGGGTTTGCAGTTTGATCAGAATGTGGCTCAAAGCATCATCACAGAGAAGCCTGGGGCAGCAA
CCAAACTTCTGTATCAGTTGTACATTGCTCTTCAGAAAAAGAAGAAAACAGGGCTGACTGGACTAGAGAT
ACAAACCATGCAACCCCAGACAAACTTGAGGCTTCAGACCCTCAAAAGTGAGGCTTTTCGAGAGCAACGC
TTAAACAGAAGACGACAAAATGAGATAATGGCCAAAATCCAGGCAGCCATTATACAGATCCCCAAGCCTG
AATCCAACCGTACTTTGAAAGCTATTGAGGCTCAAAAACTGATGAAAAAGAAAAAGGAGGCAGAGGACGT
GGCCAATGAGATTAAGAAATTTGAAGCACTAATTAAAAAGGATCTCCAAATTAAAGAAAGTGTATCCAAG
ACTTCTTTAGAAACAACAGACCAGACAACTGCAGAACTGCTCAACACTTATTCAGATGATGACTACATTA
AAAAGATCCAGAAACGCCTAGAAGAAGACGCTTTCGCACGCGAGCAAAGGGAAAAAAGACGACGCAGATT
GTTGATGGATCAGCTAATGGCCCATGAAGCACAGGAGGAGGCCTATCGGGAAGAGCAGCTCATTCACCGG
CTCATGCGCCAGTCCCAGCAGGAGCGCAGGATTGCTGTGCAGCTCATGCATGTTCGCCACGAGAAGGAAG
TTTTGTGGCAAAATAGAATTTTCCGAGAGAAACAATTTGAAGAAAGACGACTTAAGGATTTCCAGGATGC
TCTTGATAGAGAAGCGGCTCTTGCCAAACAAGCCAAGATTGATTTTGCAGAACAAACCTTGAGGGAGAAG
GAAATTCATGAAAAGATCTCTGTGGAAAGAGCCCAACAGCGTTATAAGAAGCATTATGGGATATGTGCAG
AGATTTTGGATCAAATGCTAGATTTGTGCACGAAGGTGGCAGACTATAGGTTGCTGACAAATAATCTTAT
TCCACATAAGATGATGCACGATTGGAAAGAACTGTTTTTTAGTGGAATTCCCATATATGAACAGACTTCT
CTTACACATGGACAAACAGAACCCACTGAGGATCACCGTGCAGAAGTGAAGAAAAGGAACTTACTCGATA
GCAAAGATTATGAAGATTATAAGAACATGGTTGGAGAGTGGGCCTTACCAGAGGACATGGTTAATAGTTC
ACCACCCTCCAACAATAGCATTTTGGGTCACGTGCTTCTGAGATTAATTGAAAAAGCTGATCCATCTGCA
AGTAATGCTGAAGCCACTGAATTACCTTCACTTGCGGTCAAGGGTTGTATACTGGGGAAGACACTCAGTG
GAAAAACTACTGTTCTAAAGTCTCTACAAAATGACTTTCCTGTTCATGTGCTTTCTATTGATACTCTTGT
CCAAGAGGCTATCCAGGCGTTTCATGAAAGACAAAAAAGCGGTAAGACACCACCAACTCAGGAAGATGAT
AAAAGAGATCCTGTAGTGAACCAGGAAAAAGTGAGCAAAACTCAGGATAAAAATGTGTTAGCAGTTAGTC
CAGTTCCAGGGGACAGAACATCCCAAAAAGAAGGTGTCAAGATTAATGAATTTGAACAGTTCAGATCAAG
TGATAGCTTTTTATCACTTAGCATGCGAGCTCAACTTGGTGCAAAGTCAGAGTTGATGCTTAGAAGAGGA
AAGAGCATTCCAGACATACTTCTGGTCAGCATCCTGGTAAATGCTATAAAGGAGATACCTGTGGACCAAA
GCTGGGTTCTTGATGGATTTCCAATAACATTAAATCAAGCCAAACTCCTGGAGGAAGCACTTACAGGGTA
CAAAAGAAAATTCCTACAGTTAAAGAAGAAGAAAGAACAAATGCCCACATTGGCCCTAGACCCCTCAACT
TCCACAGAGGTCTCTCTTCTCCCATCTGCACTTGATTTTGTCATATTGCTAGATATTTCCGATAACTCAT
CGTTGGCTCGAACTAATGATATCATAGCTAAAGAAATCTCACATGAAATTTCTCATGAAAATGTTGGCCG
TCCTGGAACTGGTACAAGCCAAGATAATAAGAGCGAGGACCGGAACTTAAGAGACCACATACAGCACAGA
ATTGTTGGCTTCTTGGACAACTGGCCACTGTTGGAAGAGTGGTTTACACAGCCAAAAAACATTCTGACGA
AAGTCAATGCTGAAATAGATGAAGCGCTCTTATGCCAAAAAGTAAAAGAAATTTTTGCTACTGAAACAGT
AAACAAAAAGATCAAAGTTGAAAAGACACTGGAAGAAAAGGAAACTGAGAAAAAGGCAGGAGCTCCCCCG
GCTGAGCCTCCCGCTATGAGCCCTCCCCTTTCTTCTGAAGCAGAAAAAGACAAGGAGCTTCATCAGGCAA
AAACTCCTGGGAAAGGAAAGACACAATCAGGTGACTGA

Translation (875 aa):
MSEILCQWLNQELRVSRTVSPKSFAKAFSNGYLIGEVLFKFELQSDFAEFSESRGSTAKLNNFSRLQPTL
HLLGLQFDQNVAQSIITEKPGAATKLLYQLYIALQKKKKTGLTGLEIQTMQPQTNLRLQTLKSEAFREQR
LNRRRQNEIMAKIQAAIIQIPKPESNRTLKAIEAQKLMKKKKEAEDVANEIKKFEALIKKDLQIKESVSK
TSLETTDQTTAELLNTYSDDDYIKKIQKRLEEDAFAREQREKRRRRLLMDQLMAHEAQEEAYREEQLIHR
LMRQSQQERRIAVQLMHVRHEKEVLWQNRIFREKQFEERRLKDFQDALDREAALAKQAKIDFAEQTLREK
EIHEKISVERAQQRYKKHYGICAEILDQMLDLCTKVADYRLLTNNLIPHKMMHDWKELFFSGIPIYEQTS
LTHGQTEPTEDHRAEVKKRNLLDSKDYEDYKNMVGEWALPEDMVNSSPPSNNSILGHVLLRLIEKADPSA
SNAEATELPSLAVKGCILGKTLSGKTTVLKSLQNDFPVHVLSIDTLVQEAIQAFHERQKSGKTPPTQEDD
KRDPVVNQEKVSKTQDKNVLAVSPVPGDRTSQKEGVKINEFEQFRSSDSFLSLSMRAQLGAKSELMLRRG
KSIPDILLVSILVNAIKEIPVDQSWVLDGFPITLNQAKLLEEALTGYKRKFLQLKKKKEQMPTLALDPST
STEVSLLPSALDFVILLDISDNSSLARTNDIIAKEISHEISHENVGRPGTGTSQDNKSEDRNLRDHIQHR
IVGFLDNWPLLEEWFTQPKNILTKVNAEIDEALLCQKVKEIFATETVNKKIKVEKTLEEKETEKKAGAPP
AEPPAMSPPLSSEAEKDKELHQAKTPGKGKTQSGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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