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Report for CCDS3717.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3717.2 Public Homo sapiens 4 NDNF 24 110 108 CCDS HistoryNCBI Gene:79625Re-query CCDS DB by CCDS ID:3717.2Re-query CCDS DB by GeneID:79625See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3717.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379692.9 ENSP00000369014.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379692.9Link to Ensembl Protein Viewer:ENSP00000369014.4Re-query CCDS DB by Nucleotide ID:ENST00000379692Re-query CCDS DB by Protein ID:ENSP00000369014
Original member Current member NCBI NM_024574.4 NP_078850.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024574.4Link to Protein Sequence:NP_078850.3Re-query CCDS DB by Nucleotide ID:NM_024574Re-query CCDS DB by Protein ID:NP_078850Link to BLAST:NP_078850.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078850.3 568 Q8TB73 568 100% 0 0

Chromosomal Locations for CCDS 3717.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 121036264 121037657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121039930 121040054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 121045650 121045837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGGTGCTGCTCCACTGGTGCCTGCTGTGGCTCCTGTTTCCACTCAGCTCAAGGACCCAGAAGTTACCCA
CCCGGGATGAGGAACTTTTTCAGATGCAGATCCGGGACAAGGCATTTTTTCATGATTCGTCAGTAATTCC
AGATGGAGCTGAAATTAGCAGTTATCTCTTTAGAGATACACCTAAGAGGTATTTCTTTGTGGTTGAAGAA
GACAATACTCCATTATCAGTCACAGTGACGCCCTGTGATGCGCCTTTGGAGTGGAAGCTGAGCCTCCAGG
AGCTGCCAGAGGACAGGAGCGGGGAAGGCTCAGGTGATCTGGAACCTCTTGAGCAGCAGAAGCAGCAGAT
CATTAATGAGGAAGGCACTGAGTTATTCTCCTACAAAGGCAATGATGTTGAGTATTTTATATCGTCTAGT
TCCCCATCCGGTTTATATCAGTTGGATCTTCTTTCAACAGAGAAAGACACACATTTCAAAGTATATGCCA
CCACAACTCCAGAATCTGATCAGCCATACCCTGAGTTACCCTATGACCCAAGAGTAGATGTGACCTCACT
GGGGCGCACCACGGTCACTTTGGCCTGGAAACCAAGCCCCACTGCCTCTTTGCTGAAACAACCCATTCAG
TACTGTGTGGTCATCAACAAAGAGCACAATTTCAAAAGTCTCTGTGCAGTGGAAGCAAAACTGAGTGCAG
ATGATGCTTTTATGATGGCACCGAAACCTGGTCTGGACTTCAGCCCCTTTGACTTTGCCCACTTTGGATT
TCCTTCTGATAATTCAGGTAAAGAACGCAGTTTCCAGGCAAAGCCTTCTCCAAAACTGGGGCGTCATGTC
TACTCCAGGCCCAAGGTTGATATTCAGAAAATCTGCATAGGAAACAAGAACATCTTCACCGTCTCTGATC
TGAAACCCGACACGCAGTACTACTTTGATGTATTTGTGGTCAACATCAACAGCAACATGAGCACCGCTTA
TGTAGGTACCTTTGCCAGGACCAAGGAAGAAGCCAAACAGAAGACAGTCGAGCTAAAAGATGGGAAGATA
ACAGATGTATTTGTTAAAAGGAAGGGAGCAAAGTTTCTACGGTTTGCTCCAGTCTCTTCTCACCAAAAAG
TCACCTTCTTTATTCACTCTTGTCTGGATGCTGTCCAAATCCAAGTGAGAAGAGATGGGAAACTTCTTCT
GTCTCAGAATGTGGAAGGCATTCAGCAGTTTCAGCTTAGAGGAAAACCTAAAGCTAAATACCTCGTTCGA
CTGAAAGGAAACAAGAAAGGAGCATCTATGTTGAAAATTCTAGCTACCACAAGGCCTACTAAGCAGTCAT
TTCCCTCTCTTCCTGAAGACACAAGAATCAAAGCCTTTGACAAGCTCCGTACCTGTTCCTCAGCCACCGT
GGCTTGGCTAGGCACTCAGGAAAGGAACAAGTTTTGCATCTACAAAAAAGAAGTGGATGATAACTACAAT
GAAGACCAGAAGAAAAGAGAGCAAAACCAATGTCTAGGACCAGATATAAGGAAGAAGTCAGAAAAGGTCC
TCTGTAAATATTTCCACAGTCAAAACCTGCAGAAAGCAGTGACCACAGAAACAATTAAAGGTCTTCAGCC
TGGCAAATCTTACCTGCTGGATGTTTATGTCATAGGACATGGGGGGCACTCTGTAAAGTATCAGAGTAAG
GTTGTGAAAACTAGAAAGTTCTGTTAG

Translation (568 aa):
MVLLHWCLLWLLFPLSSRTQKLPTRDEELFQMQIRDKAFFHDSSVIPDGAEISSYLFRDTPKRYFFVVEE
DNTPLSVTVTPCDAPLEWKLSLQELPEDRSGEGSGDLEPLEQQKQQIINEEGTELFSYKGNDVEYFISSS
SPSGLYQLDLLSTEKDTHFKVYATTTPESDQPYPELPYDPRVDVTSLGRTTVTLAWKPSPTASLLKQPIQ
YCVVINKEHNFKSLCAVEAKLSADDAFMMAPKPGLDFSPFDFAHFGFPSDNSGKERSFQAKPSPKLGRHV
YSRPKVDIQKICIGNKNIFTVSDLKPDTQYYFDVFVVNINSNMSTAYVGTFARTKEEAKQKTVELKDGKI
TDVFVKRKGAKFLRFAPVSSHQKVTFFIHSCLDAVQIQVRRDGKLLLSQNVEGIQQFQLRGKPKAKYLVR
LKGNKKGASMLKILATTRPTKQSFPSLPEDTRIKAFDKLRTCSSATVAWLGTQERNKFCIYKKEVDDNYN
EDQKKREQNQCLGPDIRKKSEKVLCKYFHSQNLQKAVTTETIKGLQPGKSYLLDVYVIGHGGHSVKYQSK
VVKTRKFC


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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