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Report for CCDS37217.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37217.1 Public Mus musculus 15 Krt88 23 108 98 CCDS HistoryNCBI Gene:66322Re-query CCDS DB by CCDS ID:37217.1Re-query CCDS DB by GeneID:66322See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37217.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023781.8 ENSMUSP00000023781.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023781.8Link to Ensembl Protein Viewer:ENSMUSP00000023781.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023781Re-query CCDS DB by Protein ID:ENSMUSP00000023781
Original member Current member NCBI NM_025487.3 NP_079763.1 Accepted alive Link to Nucleotide Sequence:NM_025487.3Link to Protein Sequence:NP_079763.1Re-query CCDS DB by Nucleotide ID:NM_025487Re-query CCDS DB by Protein ID:NP_079763Link to BLAST:NP_079763.1

Chromosomal Locations for CCDS 37217.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 101447852 101447854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101450438 101450542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101452379 101452596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101452892 101452923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 101453472 101453629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (516 nt):
ATGTGTGAGAAGATGAAGGCCACTGTGCAGAAATGTGTGCAGACCCCTAGGCACAGCAAGGAGGCCCTGA
ATAGGCTCAACCAGGCTATCCAGCAGCTGAAGATGGAGCCTTGTGAACTACAGAAAAGCCAAGACTTGGA
GGCCATGCCGGATGCGGCCTCAGGCAGCGCTAAGGGCAGACTGGCCTGGCTGGAGGCTGCCCTGCAGCGA
GCCAAGCAGGACATGGCTCGGCAGCTACGTGAGTACCAGGAGCTCATGATCGTCAAACTGGGCCTGGACT
TTGAGATCGCTACCTACCGCAGGCTGCTGGAGGGTGAGGAGCAGAGGCTTGGTCTGGGACTTGGGGCAGG
GAGTGTGGCTCCCGGCGGTGACGTCACTGGAGACAGGTCCTCCCTAAGGGCACCCGGAGTCAGTTCCTGT
GGCCTGAACATGAGCGCCCCAAGTGGTGGCTGCGCTCTCTGCAGCTCTGCGGGCTGTGTTGGAGGCTTTG
GCTGCCTTGGCTCCCGTGAATGTTGA

Translation (171 aa):
MCEKMKATVQKCVQTPRHSKEALNRLNQAIQQLKMEPCELQKSQDLEAMPDAASGSAKGRLAWLEAALQR
AKQDMARQLREYQELMIVKLGLDFEIATYRRLLEGEEQRLGLGLGAGSVAPGGDVTGDRSSLRAPGVSSC
GLNMSAPSGGCALCSSAGCVGGFGCLGSREC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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