NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37522.1 Public Mus musculus 17 Rps10 23 108 98 CCDS HistoryNCBI Gene:67097Re-query CCDS DB by CCDS ID:37522.1Re-query CCDS DB by GeneID:67097See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114881.8 ENSMUSP00000110531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114881.8Link to Ensembl Protein Viewer:ENSMUSP00000110531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114881Re-query CCDS DB by Protein ID:ENSMUSP00000110531
Original member Current member EBI ENSMUST00000114882.8 ENSMUSP00000110532.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114882.8Link to Ensembl Protein Viewer:ENSMUSP00000110532.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114882Re-query CCDS DB by Protein ID:ENSMUSP00000110532
Original member Current member EBI ENSMUST00000178774.2 ENSMUSP00000136042.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178774.2Link to Ensembl Protein Viewer:ENSMUSP00000136042.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178774Re-query CCDS DB by Protein ID:ENSMUSP00000136042
Original member Current member NCBI NM_025963.4 NP_080239.1 Accepted alive Link to Nucleotide Sequence:NM_025963.4Link to Protein Sequence:NP_080239.1Re-query CCDS DB by Nucleotide ID:NM_025963Re-query CCDS DB by Protein ID:NP_080239Link to BLAST:NP_080239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080239.1 165 P63325 165 100% 0 0

Chromosomal Locations for CCDS 37522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27630465 27630506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27631200 27631255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27632279 27632356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27634072 27634243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27634326 27634475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGTTGATGCCTAAGAAGAATCGGATTGCCATCTACGAACTCCTTTTTAAGGAGGGCGTGATGGTCGCCA
AAAAGGATGTCCACATGCCTAAGCACCCGGAGCTGGCAGACAAAAATGTGCCCAACCTTCATGTAATGAA
GGCCATGCAGTCTCTCAAGTCTCGAGGCTACGTGAAGGAACAGTTTGCTTGGAGACATTTCTACTGGTAC
CTTACGAACGAGGGCATCCAGTATCTCCGAGACTACCTGCACCTACCCCCGGAGATCGTGCCCGCCACCC
TGCGTCGCAGCCGTCCCGAGACCGGCAGGCCTCGGCCCAAAGGTCCAGAGGGTGAGCGACCTGCAAGATT
CACAAGAGGGGAGGCTGACAGAGACACCTACAGAAGGAGCGCTGTGCCCCCTGGAGCTGACAAGAAAGCT
GAGGCTGGGGCTGGCTCAGCCACTGAGTTCCAGTTTAGAGGCGGCTTTGGTCGTGGACGTGGTCAGCCAC
CTCAGTGA

Translation (165 aa):
MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWY
LTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGPEGERPARFTRGEADRDTYRRSAVPPGADKKA
EAGAGSATEFQFRGGFGRGRGQPPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH