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Report for CCDS37538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37538.1 Public Mus musculus 17 Rnf8 23 108 98 CCDS HistoryNCBI Gene:58230Re-query CCDS DB by CCDS ID:37538.1Re-query CCDS DB by GeneID:58230See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37538.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024817.14 ENSMUSP00000024817.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024817.14Link to Ensembl Protein Viewer:ENSMUSP00000024817.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000024817Re-query CCDS DB by Protein ID:ENSMUSP00000024817
Original member Current member NCBI NM_021419.2 NP_067394.1 Accepted alive Link to Nucleotide Sequence:NM_021419.2Link to Protein Sequence:NP_067394.1Re-query CCDS DB by Nucleotide ID:NM_021419Re-query CCDS DB by Protein ID:NP_067394Link to BLAST:NP_067394.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067394.1 488 Q8VC56 488 100% 0 0

Chromosomal Locations for CCDS 37538.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29614968 29615078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29621509 29621637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29626506 29627249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29628960 29629022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29631671 29631760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29634661 29634768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29635818 29636022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29641216 29641232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGGCGAGCCCGACCCCTTGGTCTCGGGGCAGCTCGCGGCCCGCCGGAGCTGGTGCTTGCGGCGGCTGG
GGATGGACTGCGAGTGGCTGCAGCTGGAGGCTGGGACTGAGGTGACCATAGGACGGGGACTTAGTGTCAC
ATACCAGCTGATATCAAAGGTTTGCCCTCTGATGATTTCCCGAAGCCACTGTGTTCTGAAGCAGAATCCT
GAGGGACAGTGGACCATTATGGACAATAAGAGTCTGAATGGTGTTTGGCTGAACAGAGAACGTCTGGCAC
CATTACAGGGTTATTGCATCCGTAAGGGAGACCATATCCAGCTCGGTGTGCCGCTGGAAAGCAGGGAGAC
GGCGGAGTATGAATACGAAGTCATTGAAGAAGACTGGGAGAGTCTGGCTCCCTGCCTTGCCCCGAAGAAT
GACCAGAGAATGGAAAAACATAAAGGCTCGAGAACTAAGAGGAAATTCAGTTCGCCTGGGTTAGAGAATC
TTCCAGCCGAGGGCTCCTCAGATCTCAGATGCCCACTGGCTAATGTCGCCAGTAAACCCATTGAGCCAGA
GAAGTTGCATGGCAAAGGTGACGCATCGAGTCAGTCCTTGGGATGCTTGTGTCCTGGGCTGACTTCTCTG
AAGGCGAGTGAGAGGGCCGCCGGGCCTCATGCTTGCTCTGCTCTTCCAAAGGTCCTGGAACTCAGTTGTC
CTAAGAAGCAGAAGGCCTGCAGACCATCAGCATCTCAGAACAGCTTAGAACTGTTTAAGGTGACCATGTC
CAGGATGCTGAAGCTGAAAACACAGATGCAGGAGAAGCAGATAGCTGTCCTAAACGTCAAGAGACAGACT
CGGAAGGGGAGCTCAAAGAAGATCGTGAGGATGGAGAAGGAGCTGCGAAACTTACAGTCTCAGCTGTATG
CAGAGCAGGCTCAGCAGCAAGCCAGAGTGGAGCAGCTGGAGAAGACTTTCCAGGAGGAGGCACATTACCT
CCAGGGTTTGGAGAAAGAGCAAGGAGAGTGCGACCTGAAGCAACAGCTGGTGCAGGCCCTGCAGGAGCAT
CAGGCTCTAATGGAAGAACTAAATTGCAGCAAGAAGGACTTTGAGAAAATCATTCAAGCCAAGAACAAAG
AATTGGAGCAGACCAAGGAAGAAAAGGACAAGGTGCAAGCGCAGAAGGAGGAGGTTCTCAGCCACATGAA
CGACTTGCTGGAGAACGAGCTCCAGTGCATTATCTGCTCGGAGTACTTTATTGAGGCTGTCACCCTGAAC
TGTGCCCACAGTTTCTGCTCCTTCTGTATCAATGAATGGATGAAACGGAAAGTAGAGTGTCCCATTTGTC
GAAAGGACATTGAGTCCAGAACCAACTCCCTGGTTCTGGACAACTGCATTAGTAAGATGGTGGATAACCT
AAGCTCAGACGTGAAGGAAAGAAGAAGTGTCCTTATTAGGGAACGGAGAGCAAAGAGACTGTCATGA

Translation (488 aa):
MGEPDPLVSGQLAARRSWCLRRLGMDCEWLQLEAGTEVTIGRGLSVTYQLISKVCPLMISRSHCVLKQNP
EGQWTIMDNKSLNGVWLNRERLAPLQGYCIRKGDHIQLGVPLESRETAEYEYEVIEEDWESLAPCLAPKN
DQRMEKHKGSRTKRKFSSPGLENLPAEGSSDLRCPLANVASKPIEPEKLHGKGDASSQSLGCLCPGLTSL
KASERAAGPHACSALPKVLELSCPKKQKACRPSASQNSLELFKVTMSRMLKLKTQMQEKQIAVLNVKRQT
RKGSSKKIVRMEKELRNLQSQLYAEQAQQQARVEQLEKTFQEEAHYLQGLEKEQGECDLKQQLVQALQEH
QALMEELNCSKKDFEKIIQAKNKELEQTKEEKDKVQAQKEEVLSHMNDLLENELQCIICSEYFIEAVTLN
CAHSFCSFCINEWMKRKVECPICRKDIESRTNSLVLDNCISKMVDNLSSDVKERRSVLIRERRAKRLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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