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Report for CCDS3754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3754.1 Public Homo sapiens 4 ZNF330 24 110 108 CCDS HistoryNCBI Gene:27309Re-query CCDS DB by CCDS ID:3754.1Re-query CCDS DB by GeneID:27309See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3754.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000262990.9 ENSP00000262990.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000262990.9Link to Ensembl Protein Viewer:ENSP00000262990.4Re-query CCDS DB by Nucleotide ID:ENST00000262990Re-query CCDS DB by Protein ID:ENSP00000262990
Original member Current member NCBI NM_014487.6 NP_055302.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014487.6Link to Protein Sequence:NP_055302.1Re-query CCDS DB by Nucleotide ID:NM_014487Re-query CCDS DB by Protein ID:NP_055302Link to BLAST:NP_055302.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055302.1 320 Q9Y3S2 320 100% 0 0

Chromosomal Locations for CCDS 3754.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141222372 141222491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141224487 141224506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141224607 141224677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141226767 141226846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141229571 141229697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141230166 141230270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141231439 141231485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141232525 141232642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141233715 141233989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGCCTAAAAAAAAGACTGGTGCGAGGAAGAAGGCTGAGAACCGCCGAGAACGTGAAAAACAACTAAGAG
CATCAAGAAGCACTATAGATTTAGCTAAACATCCATGTAATGCCTCAATGGAATGTGACAAGTGTCAGAG
GCGGCAGAAGAATAGAGCATTTTGCTACTTTTGTAATTCTGTACAGAAGTTACCAATTTGTGCACAGTGT
GGGAAAACAAAGTGCATGATGAAGTCTTCAGACTGTGTCATAAAGCATGCTGGTGTATACAGTACTGGCC
TTGCAATGGTGGGTGCAATATGTGACTTCTGTGAAGCTTGGGTTTGCCATGGTAGGAAATGTCTCAGTAC
ACATGCTTGTGCCTGCCCTCTTACCGATGCTGAGTGTGTTGAATGTGAACGAGGCGTGTGGGACCATGGA
GGCAGAATATTCAGTTGTTCTTTTTGCCATAACTTTCTCTGTGAAGATGATCAATTTGAGCATCAAGCCA
GCTGCCAGGTTTTAGAGGCAGAAACATTTAAATGTGTTTCATGCAATCGGCTTGGTCAGCACTCATGTCT
CCGTTGTAAGGCTTGTTTCTGTGATGATCATACAAGGAGCAAAGTGTTTAAGCAAGAAAAAGGAAAACAG
CCTCCTTGTCCTAAATGTGGGCATGAAACTCAGGAGACTAAGGACCTTAGCATGTCAACACGCTCCCTGA
AATTTGGCAGGCAGACTGGAGGTGAAGAGGGAGATGGAGCTTCTGGGTATGATGCTTATTGGAAGAACCT
TTCATCTGATAAGTATGGTGATACCAGCTACCACGATGAGGAGGAGGATGAGTATGAAGCAGAGGATGAT
GAAGAGGAAGAAGATGAAGGCAGAAAGGATTCAGATACTGAGTCATCAGATTTGTTTACTAATTTGAATT
TAGGAAGGACCTATGCTAGTGGCTATGCTCACTATGAGGAACAAGAGAACTAG

Translation (320 aa):
MPKKKTGARKKAENRREREKQLRASRSTIDLAKHPCNASMECDKCQRRQKNRAFCYFCNSVQKLPICAQC
GKTKCMMKSSDCVIKHAGVYSTGLAMVGAICDFCEAWVCHGRKCLSTHACACPLTDAECVECERGVWDHG
GRIFSCSFCHNFLCEDDQFEHQASCQVLEAETFKCVSCNRLGQHSCLRCKACFCDDHTRSKVFKQEKGKQ
PPCPKCGHETQETKDLSMSTRSLKFGRQTGGEEGDGASGYDAYWKNLSSDKYGDTSYHDEEEDEYEAEDD
EEEEDEGRKDSDTESSDLFTNLNLGRTYASGYAHYEEQEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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