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Report for CCDS38305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38305.1 Public Mus musculus 2 Src 23 108 98 CCDS HistoryNCBI Gene:20779Re-query CCDS DB by CCDS ID:38305.1Re-query CCDS DB by GeneID:20779See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38305.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092576.10 ENSMUSP00000090237.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092576.10Link to Ensembl Protein Viewer:ENSMUSP00000090237.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000092576Re-query CCDS DB by Protein ID:ENSMUSP00000090237
Original member Current member EBI ENSMUST00000109529.1 ENSMUSP00000105155.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109529.1Link to Ensembl Protein Viewer:ENSMUSP00000105155.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109529Re-query CCDS DB by Protein ID:ENSMUSP00000105155
Original member NCBI NM_009271.3 NP_033297.2 Updated not alive Link to Nucleotide Sequence:NM_009271.3Link to Protein Sequence:NP_033297.2Re-query CCDS DB by Nucleotide ID:NM_009271Re-query CCDS DB by Protein ID:NP_033297
Current member NCBI NM_009271.4 NP_033297.2 Accepted alive Link to Nucleotide Sequence:NM_009271.4Link to Protein Sequence:NP_033297.2Re-query CCDS DB by Nucleotide ID:NM_009271Re-query CCDS DB by Protein ID:NP_033297Link to BLAST:NP_033297.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033297.2 541 P05480-1 541 100% 0 0

Chromosomal Locations for CCDS 38305.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157457085 157457331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157458534 157458633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157458843 157458860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157462710 157462808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157462979 157463082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157464629 157464778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157465873 157466028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157467431 157467610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157468483 157468559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157469125 157469278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157469390 157469521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 157469753 157469961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGGCAGCAACAAGAGCAAGCCCAAGGACGCCAGCCAGCGGCGCCGCAGCCTGGAGCCCTCGGAAAACG
TG
CACGGGGCAGGGGGCGCCTTCCCGGCCTCACAGACACCGAGCAAGCCCGCCTCCGCCGACGGCCACCG
C
GGGCCCAGCGCCGCCTTCGTGCCGCCCGCGGCCGAGCCCAAGCTCTTCGGAGGCTTCAACTCCTCGGAC
ACC
GTCACCTCCCCGCAGAGGGCGGGGCCTCTGGCAGGTGGGGTGACCACCTTTGTGGCCCTCTATGACT
AT
GAGTCACGGACAGAGACTGACCTGTCCTTCAAGAAAGGGGAGCGGCTGCAGATTGTCAATAACACGAG
G
AAGGTGGATGTCAGAGAGGGAGACTGGTGGCTGGCACACTCGCTGAGCACGGGACAGACCGGTTACATC
CCC
AGCAACTATGTGGCGCCCTCCGACTCCATCCAGGCTGAGGAGTGGTACTTTGGCAAGATCACTAGAC
GG
GAATCAGAGCGGCTGCTGCTCAACGCCGAGAACCCGAGAGGGACCTTCCTCGTGAGGGAGAGTGAGAC
C
ACAAAAGGTGCCTACTGCCTCTCTGTATCCGACTTCGACAATGCCAAGGGCCTAAATGTGAAACACTAC
AAG
ATCCGCAAGCTGGACAGCGGCGGTTTCTACATCACCTCCCGCACCCAGTTCAACAGCCTGCAGCAGC
TC
GTGGCTTACTACTCCAAACATGCTGATGGCCTGTGTCACCGCCTCACTACCGTATGTCCCACATCCAA
G
CCTCAGACCCAGGGATTGGCCAAGGATGCGTGGGAGATCCCCCGGGAGTCCCTGCGGCTGGAGGTCAAG
CTG
GGCCAGGGTTGCTTCGGAGAGGTGTGGATGGGGACCTGGAACGGCACCACGAGGGTTGCCATCAAAA
CT
CTGAAGCCAGGCACCATGTCCCCAGAGGCCTTCCTGCAGGAGGCCCAAGTCATGAAGAAACTGAGGCA
C
GAGAAACTGGTGCAGCTGTATGCTGTGGTGTCGGAAGAACCCATTTACATTGTGACAGAGTACATGAAC
AAG
GGGAGTCTGCTGGACTTTCTCAAGGGGGAAACGGGCAAATATTTGCGGCTACCCCAGCTGGTGGACA
TG
TCTGCTCAGATCGCTTCAGGCATGGCCTATGTGGAGCGGATGAACTATGTGCACCGGGACCTTCGAGC
C
GCCAATATCCTAGTAGGGGAGAACCTGGTGTGCAAAGTGGCCGACTTTGGGTTGGCCCGGCTCATAGAA
GAC
AACGAATACACAGCCCGGCAAGGTGCCAAATTCCCCATCAAGTGGACCGCCCCTGAAGCTGCTCTGT
AC
GGCAGGTTCACCATCAAGTCGGATGTGTGGTCCTTTGGGATTCTGCTGACCGAGCTCACCACTAAGGG
A
AGAGTGCCCTATCCTGGGATGGTGAACCGTGAGGTTCTGGACCAGGTGGAGCGGGGCTACCGGATGCCT
TGT
CCCCCCGAGTGCCCCGAGTCCCTGCATGACCTTATGTGCCAGTGCTGGCGGAAGGAGCCCGAGGAGC
GG
CCCACCTTCGAGTACCTGCAGGCCTTCCTGGAAGACTACTTTACGTCCACTGAGCCACAGTACCAGCC
C
GGGGAGAACCTATAG


Translation (541 aa):
MGSNKSKPKDASQRRRSLEPSENVHGAGGAFPASQTPSKPASADGHRGPSAAFVPPAAEPKLFGGFNSSD
T
VTSPQRAGPLA
GGVTTFVALYDYESRTETDLSFKKGERLQIVNNTRKVDVREGDWWLAHSLSTGQTGYI
P
SNYVAPSDSIQAE
EWYFGKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFDNAKGLNVKHY
K
IRKLDSGGFYITSRTQFNSLQQLVAYYS
KHADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVK
L
GQGCFGEVWM
GTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMN
K
GSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE
D
NEYTARQ
GAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMP
C
PPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGENL




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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