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Report for CCDS3838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3838.1 Public Homo sapiens 4 CENPU 24 110 108 CCDS HistoryNCBI Gene:79682Re-query CCDS DB by CCDS ID:3838.1Re-query CCDS DB by GeneID:79682See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3838.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281453.10 ENSP00000281453.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281453.10Link to Ensembl Protein Viewer:ENSP00000281453.5Re-query CCDS DB by Nucleotide ID:ENST00000281453Re-query CCDS DB by Protein ID:ENSP00000281453
Original member Current member NCBI NM_024629.4 NP_078905.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024629.4Link to Protein Sequence:NP_078905.2Re-query CCDS DB by Nucleotide ID:NM_024629Re-query CCDS DB by Protein ID:NP_078905Link to BLAST:NP_078905.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078905.2 418 Q71F23-1 418 100% 0 0

Chromosomal Locations for CCDS 3838.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 184695288 184695401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184697647 184697803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184700820 184700881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184702089 184702136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184702363 184702441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184710072 184710180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184712944 184713013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184716397 184716633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184717136 184717196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184724957 184725062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184728918 184729035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184730920 184730968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 184734016 184734062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCCCGCGGGGGCGGCGGCGGCCGCGGCCTCACAGGTCTGAGGGCGCAAGACGTTCAAAGAACACTT
TAGAAAGAACACATTCCATGAAAGATAAAGCTGGTCAAAAGTGCAAGCCTATTGACGTGTTCGACTTTCC
TGATAATTCTGATGTCTCAAGCATTGGCAGGCTGGGTGAAAATGAGAAAGATGAAGAAACTTATGAGACC
TTTGATCCTCCTTTACATAGCACAGCTATATATGCTGATGAAGAAGAATTCTCCAAACATTGTGGACTGT
CTCTCTCTTCAACTCCTCCAGGAAAAGAAGCAAAAAGAAGTTCAGACACTTCTGGAAATGAAGCAAGTGA
AATCGAATCTGTAAAAATTAGTGCAAAAAAGCCAGGAAGAAAGCTCAGGCCCATTAGTGATGACTCTGAA
AGCATTGAAGAAAGTGATACAAGGAGAAAAGTTAAATCAGCAGAGAAAATAAGTACACAACGTCATGAGG
TTATTCGAACCACAGCGTCTTCAGAACTTTCAGAGAAACCAGCTGAGTCTGTCACTTCTAAAAAGACAGG
ACCCCTTAGTGCCCAGCCCTCTGTTGAAAAAGAGAACTTGGCAATAGAAAGTCAATCGAAAACTCAGAAA
AAAGGGAAGATATCTCATGACAAAAGGAAGAAATCAAGAAGTAAAGCCATAGGCTCAGATACTTCTGACA
TTGTGCACATTTGGTGTCCAGAAGGAATGAAAACCAGTGACATCAAGGAGTTGAATATTGTTTTGCCTGA
ATTTGAGAAAACCCACCTAGAGCATCAACAAAGAATAGAATCTAAAGTTTGTAAGGCAGCCATCGCCACA
TTTTATGTTAATGTTAAAGAACAATTCATCAAAATGCTTAAAGAAAGCCAGATGTTGACAAATCTGAAAA
GGAAGAATGCTAAGATGATTTCAGATATCGAAAAGAAAAGGCAGCGTATGATTGAAGTCCAGGATGAACT
GCTTCGGTTAGAGCCACAGCTGAAACAACTACAAACAAAATATGATGAACTTAAAGAGAGAAAGTCTTCC
CTTAGGAATGCAGCATATTTCTTATCTAATTTAAAACAGCTTTATCAAGATTATTCAGATGTTCAAGCTC
AAGAACCAAACGTAAAGGAAACGTATGATTCATCCAGCCTTCCAGCTCTGTTATTTAAAGCAAGAACACT
TCTGGGAGCCGAAAGCCATCTGCGAAATATCAACCATCAGTTAGAGAAGCTCCTTGACCAGGGATGA

Translation (418 aa):
MAPRGRRRPRPHRSEGARRSKNTLERTHSMKDKAGQKCKPIDVFDFPDNSDVSSIGRLGENEKDEETYET
FDPPLHSTAIYADEEEFSKHCGLSLSSTPPGKEAKRSSDTSGNEASEIESVKISAKKPGRKLRPISDDSE
SIEESDTRRKVKSAEKISTQRHEVIRTTASSELSEKPAESVTSKKTGPLSAQPSVEKENLAIESQSKTQK
KGKISHDKRKKSRSKAIGSDTSDIVHIWCPEGMKTSDIKELNIVLPEFEKTHLEHQQRIESKVCKAAIAT
FYVNVKEQFIKMLKESQMLTNLKRKNAKMISDIEKKRQRMIEVQDELLRLEPQLKQLQTKYDELKERKSS
LRNAAYFLSNLKQLYQDYSDVQAQEPNVKETYDSSSLPALLFKARTLLGAESHLRNINHQLEKLLDQG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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