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Report for CCDS38550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38550.1 Public Mus musculus 3 Mrps21 23 108 98 CCDS HistoryNCBI Gene:66292Re-query CCDS DB by CCDS ID:38550.1Re-query CCDS DB by GeneID:66292See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067298.4 ENSMUSP00000066990.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067298.4Link to Ensembl Protein Viewer:ENSMUSP00000066990.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067298Re-query CCDS DB by Protein ID:ENSMUSP00000066990
Original member Current member EBI ENSMUST00000072587.4 ENSMUSP00000130403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072587.4Link to Ensembl Protein Viewer:ENSMUSP00000130403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072587Re-query CCDS DB by Protein ID:ENSMUSP00000130403
Original member Current member NCBI NM_001355759.1 NP_001342688.1 Accepted alive Link to Nucleotide Sequence:NM_001355759.1Link to Protein Sequence:NP_001342688.1Re-query CCDS DB by Nucleotide ID:NM_001355759Re-query CCDS DB by Protein ID:NP_001342688Link to BLAST:NP_001342688.1
Original member Current member NCBI NM_078479.4 NP_510964.1 Accepted alive Link to Nucleotide Sequence:NM_078479.4Link to Protein Sequence:NP_510964.1Re-query CCDS DB by Nucleotide ID:NM_078479Re-query CCDS DB by Protein ID:NP_510964Link to BLAST:NP_510964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342688.1 87 P58059 87 100% 0 0
NP_510964.1 87 P58059 87 100% 0 0

Chromosomal Locations for CCDS 38550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95862752 95862932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95870494 95870576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (264 nt):
ATGGCTAAACATCTGAAGTTCATTGCCAGGACAGTGATGGTTCAGGAGGGGAACGTGGAAGGTGCCTACC
GGACCCTGAACAGAATCCTCACCACGGATGGGCTTACCGAAGTCATAAGTCGACGACGCTACTATGAGAA
GCCTTGCCGCCGCCGCCAGCGGGAGAGCTATGAAACATGCCGGAGGATCTACAACATGGAAATGGCTCGA
AAGATTAACTTCTTGATGCGAAAGAACCGTGCAGACCCGTGGCTGGGCTGCTGA

Translation (87 aa):
MAKHLKFIARTVMVQEGNVEGAYRTLNRILTTDGLTEVISRRRYYEKPCRRRQRESYETCRRIYNMEMAR
KINFLMRKNRADPWLGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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