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Report for CCDS38651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38651.1 Public Mus musculus 3 Adh7 23 108 98 CCDS HistoryNCBI Gene:11529Re-query CCDS DB by CCDS ID:38651.1Re-query CCDS DB by GeneID:11529See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090171.6 ENSMUSP00000087633.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090171.6Link to Ensembl Protein Viewer:ENSMUSP00000087633.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090171Re-query CCDS DB by Protein ID:ENSMUSP00000087633
Original member Current member NCBI NM_009626.4 NP_033756.2 Accepted alive Link to Nucleotide Sequence:NM_009626.4Link to Protein Sequence:NP_033756.2Re-query CCDS DB by Nucleotide ID:NM_009626Re-query CCDS DB by Protein ID:NP_033756Link to BLAST:NP_033756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033756.2 374 Q64437 374 100% 0 0

Chromosomal Locations for CCDS 38651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138217891 138217908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138221713 138221814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138222962 138223100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223731 138223818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138223912 138224128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138226191 138226451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138227909 138228044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138228779 138228917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138231182 138231206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGGCACCGCTGGAAAAGTTATTAAGTGCAAAGCGGCTGTCCTATGGGGAGTGAACCAGCCTTTCTCCA
TTGAGGAAATCGAGGTGGCCCCACCAAAGGCTAAGGAAGTCCGTGTTAAGATTTTGGCCACAGGAATCTG
TCGCACAGATGACCATATAATAAAAGGATCGATGGTGTCTAAGTTTCCAGTGATTGTGGGACATGAAGCA
GTTGGGGTTGTGGAGAGTGTTGGAGAAGGGGTCACTACAGTGAGACCAGGTGACAAAGTCATCCCCCTCT
TTCTACCACAGTGTAGAGAATGCAACGCCTGCCTGAACCCAGAGGGCAATCTCTGCATTAGGAGCGATCT
GACAGGCCGTGGAGTATTGGCTGATGGCACTACCAGATTCACCTGCAAGGGCAAACCGGTCCAGCACTTC
ATGAACACCAGCACCTTCACTGAGTACACGGTGCTGGACGAATCCTCCGTAGCGAAGGTTGACGGTGCGG
CTCCGCCTGAGAAAGCCTGCTTGATCGGCTGTGGATTTTCCACGGGTTATGGAGCTGCTGTTAAAACTGC
CAAGGTCACCCCTGGCTCCACTTGTGTTGTCTTTGGCCTGGGAGGAGTTGGCCTGTCAGTCATCATGGGC
TGTAAAGCAGCTGGTGCCTCCAGGATCATTGGAATCGACATCAACAAAGACAAATTCCAGAAAGCTCTGG
CCGTAGGTGCCACAGAGTGTATCAGTCCCAAGGACTCTACCAAGCCCATCAGTGAGGTGCTATCCGACAT
GACAGGCAACACCATACAGTATACTTTTGAAGTTATTGGGCGTCTTGAGACCATGGTTGATGCCCTCTCA
TCTTGCCATATGAACTATGGGACCAGTGTGGTGGTTGGTGCTCCTCCGTCAGCCAAGATGCTCACCTATG
ACCCAATGCTGCTCTTCACTGGGCGTACGTGGAAGGGCTGCGTCTTTGGAGGGTGGAAGAGCAGAGATGA
TGTACCTAAACTGGTGACTGAGTTCCTGGAAAAGAAGTTTGACCTGGACCAGTTGATAACCCACACCTTG
CCTTTTAATAACATCAATGAAGGATTTGAATTGCTGTATTCGGGGAAAAGCATTCGGACTGTCCTGACAT
TTTGA

Translation (374 aa):
MGTAGKVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGSMVSKFPVIVGHEA
VGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHF
MNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKVTPGSTCVVFGLGGVGLSVIMG
CKAAGASRIIGIDINKDKFQKALAVGATECISPKDSTKPISEVLSDMTGNTIQYTFEVIGRLETMVDALS
SCHMNYGTSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTL
PFNNINEGFELLYSGKSIRTVLTF


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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