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Report for CCDS3880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3880.1 Public Homo sapiens 5 DAP 24 110 108 CCDS HistoryNCBI Gene:1611Re-query CCDS DB by CCDS ID:3880.1Re-query CCDS DB by GeneID:1611See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230895.11 ENSP00000230895.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230895.11Link to Ensembl Protein Viewer:ENSP00000230895.7Re-query CCDS DB by Nucleotide ID:ENST00000230895Re-query CCDS DB by Protein ID:ENSP00000230895
Original member Current member NCBI NM_004394.3 NP_004385.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004394.3Link to Protein Sequence:NP_004385.1Re-query CCDS DB by Nucleotide ID:NM_004394Re-query CCDS DB by Protein ID:NP_004385Link to BLAST:NP_004385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004385.1 102 P51397 102 100% 0 0

Chromosomal Locations for CCDS 3880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 10681056 10681169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10683529 10683571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10748175 10748271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 10761014 10761068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (309 nt):
ATGTCTTCGCCTCCCGAAGGGAAACTAGAGACTAAAGCTGGACACCCGCCCGCCGTGAAAGCTGGTGGAA
TGCGAATTGTGCAGAAACACCCACATACAGGAGACACCAAAGAAGAGAAAGACAAGGATGACCAGGAATG
GGAAAGCCCCAGTCCACCTAAACCCACTGTGTTCATCTCTGGGGTCATCGCCCGGGGTGACAAAGATTTC
CCCCCGGCGGCTGCGCAGGTGGCTCACCAGAAGCCGCATGCCTCCATGGACAAGCATCCTTCCCCAAGAA
CCCAGCACATCCAGCAGCCACGCAAGTGA

Translation (102 aa):
MSSPPEGKLETKAGHPPAVKAGGMRIVQKHPHTGDTKEEKDKDDQEWESPSPPKPTVFISGVIARGDKDF
PPAAAQVAHQKPHASMDKHPSPRTQHIQQPRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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