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Report for CCDS3947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3947.1 Public Homo sapiens 5 PAIP1 24 110 108 CCDS HistoryNCBI Gene:10605Re-query CCDS DB by CCDS ID:3947.1Re-query CCDS DB by GeneID:10605See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306846.8 ENSP00000302768.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306846.8Link to Ensembl Protein Viewer:ENSP00000302768.3Re-query CCDS DB by Nucleotide ID:ENST00000306846Re-query CCDS DB by Protein ID:ENSP00000302768
Original member Current member NCBI NM_006451.5 NP_006442.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006451.5Link to Protein Sequence:NP_006442.2Re-query CCDS DB by Nucleotide ID:NM_006451Re-query CCDS DB by Protein ID:NP_006442Link to BLAST:NP_006442.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006442.2 479 Q9H074-1 479 100% 0 0

Chromosomal Locations for CCDS 3947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 43527376 43527469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43529786 43529879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43533738 43533792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43534853 43534970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43535534 43535640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43536819 43536944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43538924 43539035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43543004 43543116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43547728 43547913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43555830 43555999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 43556582 43556846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGTCGGACGGTTTCGATCGGGCCCCAGGTGCTGGTCGGGGCCGGAGCCGGGGCCTGGGCCGCGGAGGGG
GCGGGCCTGAGGGCGGCGGTTTCCCGAACGGAGCGGGGCCTGCTGAGCGGGCGCGGCACCAGCCGCCGCA
ACCCAAAGCCCCGGGCTTCCTGCAGCCACCGCCGCTGCGCCAGCCCAGGACGACCCCGCCGCCAGGGGCC
CAGTGCGAGGTCCCCGCCAGCCCCCAGCGGCCTTCCCGGCCCGGGGCGCTCCCAGAGCAAACGAGGCCCC
TGAGAGCTCCACCTAGTTCACAGGATAAAATCCCACAGCAGAACTCGGAGTCAGCAATGGCTAAGCCCCA
GGTGGTTGTAGCTCCTGTATTAATGTCTAAGCTGTCTGTGAATGCCCCTGAATTTTACCCTTCAGGTTAT
TCTTCCAGTTACACAGAATCCTATGAGGATGGTTGTGAGGATTATCCTACTCTATCAGAATATGTTCAGG
ATTTTTTGAATCATCTTACAGAGCAGCCTGGCAGTTTTGAAACTGAAATTGAACAGTTTGCAGAGACCCT
GAATGGTTGTGTTACAACAGATGATGCTTTGCAAGAACTTGTGGAACTCATCTATCAACAGGCCACATCT
ATCCCAAATTTCTCTTATATGGGAGCTCGCCTGTGTAATTACCTGTCCCATCATCTGACAATTAGCCCAC
AGAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGGACTGAATATGAAGTTAAAGATCAAGCTGC
AAAAGGGGATGAAGTTACTCGAAAACGATTTCATGCATTTGTACTCTTTCTGGGAGAACTTTATCTTAAC
CTGGAGATCAAGGGAACAAATGGACAGGTTACAAGAGCAGATATTCTTCAGGTTGGTCTTCGAGAATTGC
TGAATGCCCTGTTTTCTAATCCTATGGATGACAATTTAATTTGTGCAGTAAAATTGTTAAAGTTGACAGG
ATCAGTTTTGGAAGATGCTTGGAAGGAAAAAGGAAAGATGGATATGGAAGAAATTATTCAGAGAATTGAA
AACGTTGTCCTAGATGCAAACTGCAGTAGAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTCCGGT
CAAGTAACTGGGGCAGAGTCCATGCAACTTCAACATATAGAGAAGCAACACCAGAAAATGATCCTAACTA
CTTTATGAATGAACCAACATTTTATACATCTGATGGTGTTCCTTTCACTGCAGCTGATCCAGATTACCAA
GAGAAATACCAAGAATTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAAAATGGAACAGATTTAT
CCGGGGCTGGTGATCCATACTTGGATGATATTGATGATGAGATGGACCCAGAGATAGAAGAAGCTTATGA
AAAGTTTTGTTTGGAATCAGAGCGTAAGCGAAAACAGTAA

Translation (479 aa):
MSDGFDRAPGAGRGRSRGLGRGGGGPEGGGFPNGAGPAERARHQPPQPKAPGFLQPPPLRQPRTTPPPGA
QCEVPASPQRPSRPGALPEQTRPLRAPPSSQDKIPQQNSESAMAKPQVVVAPVLMSKLSVNAPEFYPSGY
SSSYTESYEDGCEDYPTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATS
IPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLN
LEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIE
NVVLDANCSRDVKQMLLKLVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQ
EKYQELLEREDFFPDYEENGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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