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Report for CCDS3968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3968.1 Public Homo sapiens 5 SLC38A9 24 110 108 CCDS HistoryNCBI Gene:153129Re-query CCDS DB by CCDS ID:3968.1Re-query CCDS DB by GeneID:153129See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3968.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318672.7 ENSP00000316596.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000318672.7Link to Ensembl Protein Viewer:ENSP00000316596.3Re-query CCDS DB by Nucleotide ID:ENST00000318672Re-query CCDS DB by Protein ID:ENSP00000316596
Original member Current member EBI ENST00000396865.7 ENSP00000380074.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396865.7Link to Ensembl Protein Viewer:ENSP00000380074.2Re-query CCDS DB by Nucleotide ID:ENST00000396865Re-query CCDS DB by Protein ID:ENSP00000380074
Original member Current member NCBI NM_001349382.1 NP_001336311.1 Accepted alive Link to Nucleotide Sequence:NM_001349382.1Link to Protein Sequence:NP_001336311.1Re-query CCDS DB by Nucleotide ID:NM_001349382Re-query CCDS DB by Protein ID:NP_001336311Link to BLAST:NP_001336311.1
Original member Current member NCBI NM_001349383.1 NP_001336312.1 Accepted alive Link to Nucleotide Sequence:NM_001349383.1Link to Protein Sequence:NP_001336312.1Re-query CCDS DB by Nucleotide ID:NM_001349383Re-query CCDS DB by Protein ID:NP_001336312Link to BLAST:NP_001336312.1
Original member Current member NCBI NM_001349384.1 NP_001336313.1 Accepted alive Link to Nucleotide Sequence:NM_001349384.1Link to Protein Sequence:NP_001336313.1Re-query CCDS DB by Nucleotide ID:NM_001349384Re-query CCDS DB by Protein ID:NP_001336313Link to BLAST:NP_001336313.1
Original member Current member NCBI NM_173514.4 NP_775785.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173514.4Link to Protein Sequence:NP_775785.2Re-query CCDS DB by Nucleotide ID:NM_173514Re-query CCDS DB by Protein ID:NP_775785Link to BLAST:NP_775785.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336311.1 561 Q8NBW4-1 561 100% 0 0
NP_001336312.1 561 Q8NBW4-1 561 100% 0 0
NP_001336313.1 561 Q8NBW4-1 561 100% 0 0
NP_775785.2 561 Q8NBW4-1 561 100% 0 0

Chromosomal Locations for CCDS 3968.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 55626494 55626659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55627891 55627980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55633754 55633902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55635544 55635657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55645789 55645895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55649207 55649314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55652529 55652723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55656715 55656774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55664693 55664863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669228 55669321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669557 55669620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55669758 55669879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55672563 55672695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 55697846 55697958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCAAATATGAATAGTGATTCTAGGCATCTTGGCACCTCTGAGGTAGATCATGAAAGAGATCCTGGAC
CTATGAATATCCAGTTTGAGCCATCGGATCTAAGATCCAAAAGGCCTTTCTGTATAGAGCCCACAAACAT
CGTGAATGTGAATCATGTCATTCAGAGGGTTAGTGACCATGCCTCTGCCATGAACAAGAGAATTCATTAC
TACAGCCGGCTCACCACTCCTGCAGACAAGGCACTGATTGCCCCAGACCATGTAGTTCCAGCTCCAGAAG
AGTGCTATGTGTATAGTCCATTGGGCTCTGCTTATAAACTTCAAAGTTACACTGAAGGATACGGTAAAAA
CACCAGTTTAGTAACCATTTTTATGATTTGGAATACCATGATGGGAACATCTATACTAAGCATTCCTTGG
GGCATAAAACAGGCTGGATTTACTACTGGAATGTGTGTCATCATACTGATGGGCCTTTTAACACTTTATT
GCTGCTACAGAGTAGTGAAATCACGGACTATGATGTTTTCGTTGGATACCACTAGCTGGGAATATCCAGA
TGTCTGCAGACATTATTTCGGCTCCTTTGGGCAGTGGTCGAGTCTCCTTTTCTCCTTGGTGTCTCTCATT
GGAGCAATGATAGTTTATTGGGTGCTTATGTCAAATTTTCTTTTTAATACTGGAAAGTTTATTTTTAATT
TTATTCATCACATTAATGACACAGACACTATACTGAGTACCAATAATAGCAACCCTGTGATTTGTCCAAG
TGCCGGGAGTGGAGGCCATCCTGACAACAGCTCTATGATTTTCTATGCCAATGACACAGGAGCCCAACAG
TTTGAAAAGTGGTGGGATAAGTCCAGGACAGTCCCCTTTTATCTTGTAGGGCTCCTCCTCCCACTGCTCA
ATTTCAAGTCTCCTTCATTTTTTTCAAAATTTAATATCCTAGGCACAGTGTCTGTCCTTTATTTGATTTT
CCTTGTCACCTTTAAGGCTGTTCGCTTGGGATTTCATTTGGAATTTCATTGGTTTATACCAACAGAATTT
TTTGTACCAGAGATAAGATTTCAGTTTCCACAGCTGACTGGAGTGCTTACCCTTGCTTTTTTTATTCATA
ATTGTATCATCACACTCTTGAAGAACAACAAGAAACAAGAAAACAATGTGAGGGACTTGTGCATTGCTTA
TATGCTGGTGACATTAACTTATCTCTATATTGGAGTCCTGGTTTTTGCTTCATTTCCTTCACCACCATTA
TCCAAAGATTGTATTGAGCAGAATTTTTTAGACAACTTCCCTAGCAGTGACACCCTGTCCTTCATTGCAA
GGATATTCCTGCTGTTCCAGATGATGACTGTATACCCACTCTTAGGCTACCTGGCTCGTGTCCAGCTTTT
GGGCCATATCTTCGGTGACATTTATCCTAGCATTTTCCATGTGCTGATTCTTAATCTAATTATTGTGGGA
GCTGGAGTGATCATGGCCTGTTTCTACCCAAACATAGGAGGGATCATAAGATATTCAGGAGCAGCATGTG
GACTGGCCTTTGTATTCATATACCCATCTCTCATCTATATAATTTCCCTCCACCAAGAAGAGCGTCTGAC
ATGGCCTAAATTAATCTTCCACGTTTTCATCATCATTTTGGGCGTGGCTAACCTGATTGTTCAGTTTTTT
ATGTGA

Translation (561 aa):
MANMNSDSRHLGTSEVDHERDPGPMNIQFEPSDLRSKRPFCIEPTNIVNVNHVIQRVSDHASAMNKRIHY
YSRLTTPADKALIAPDHVVPAPEECYVYSPLGSAYKLQSYTEGYGKNTSLVTIFMIWNTMMGTSILSIPW
GIKQAGFTTGMCVIILMGLLTLYCCYRVVKSRTMMFSLDTTSWEYPDVCRHYFGSFGQWSSLLFSLVSLI
GAMIVYWVLMSNFLFNTGKFIFNFIHHINDTDTILSTNNSNPVICPSAGSGGHPDNSSMIFYANDTGAQQ
FEKWWDKSRTVPFYLVGLLLPLLNFKSPSFFSKFNILGTVSVLYLIFLVTFKAVRLGFHLEFHWFIPTEF
FVPEIRFQFPQLTGVLTLAFFIHNCIITLLKNNKKQENNVRDLCIAYMLVTLTYLYIGVLVFASFPSPPL
SKDCIEQNFLDNFPSSDTLSFIARIFLLFQMMTVYPLLGYLARVQLLGHIFGDIYPSIFHVLILNLIIVG
AGVIMACFYPNIGGIIRYSGAACGLAFVFIYPSLIYIISLHQEERLTWPKLIFHVFIIILGVANLIVQFF
M


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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