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Report for CCDS39735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39735.1 Public Mus musculus 7 Ppp1r12c 23 108 98 CCDS HistoryNCBI Gene:232807Re-query CCDS DB by CCDS ID:39735.1Re-query CCDS DB by GeneID:232807See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013886.8 ENSMUSP00000013886.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013886.8Link to Ensembl Protein Viewer:ENSMUSP00000013886.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013886Re-query CCDS DB by Protein ID:ENSMUSP00000013886
Original member NCBI NM_029834.3 NP_084110.2 Updated not alive Link to Nucleotide Sequence:NM_029834.3Link to Protein Sequence:NP_084110.2Re-query CCDS DB by Nucleotide ID:NM_029834Re-query CCDS DB by Protein ID:NP_084110
Current member NCBI NM_029834.4 NP_084110.2 Accepted alive Link to Nucleotide Sequence:NM_029834.4Link to Protein Sequence:NP_084110.2Re-query CCDS DB by Nucleotide ID:NM_029834Re-query CCDS DB by Protein ID:NP_084110Link to BLAST:NP_084110.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084110.2 782 Q3UMT1 782 100% 0 0

Chromosomal Locations for CCDS 39735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4482072 4482158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4482237 4482287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4482379 4482429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4482584 4482688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4482791 4482893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4482973 4483013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4483103 4483185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4483341 4483401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4483474 4483557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4483643 4483733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4483941 4484072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4484450 4484517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4484619 4484771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4485011 4485084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4485189 4485316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4485389 4485462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4486358 4486432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4486511 4486655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4489733 4489892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4497217 4497335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4497416 4497546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4501266 4501598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGTCCGGCGAGGATGGTCCGGCAGCGGGCCCGGGGGCGGCGGCGGCTGCTGCGGCCGCCCGTGAGCGGC
GGCAGGAGCAGCTGCGGCAGTGGGGGGCTCGGGCGGGCGCCGACCCGGGCCCCGGGGAGCGGCGAGCCCG
CACGGTCCGCTTCGAGCGCGCCGCTGAGTTCCTGGCGGCCTGCGCGGGGGGCGATCTGGACGAGGCTCGC
CTGATGCTGCGCGCAGCGGATCCCGGTCCCGGCTCCGGCGCTGCGTCCGACCCCGCCGTCCCTCCGCCTG
CCCGTGCCGTGCTCGACTCCACCAACGCGGATGGCATCAGCGCCCTGCACCAGGCCTGCATAGATGAGAA
CCTGGAAGTCGTTCGCTTCCTGGTGGAGCAGGGTGCTACTGTGAACCAGGCAGACAACGAGGGCTGGACG
CCTCTGCATGTGGCTGCCTCCTGTGGGTACCTGGACATTGCCAGGTACCTCCTGAGCCATGGGGCCAACA
TTGCTGCTGTCAACAGTGACGGGGACCTGCCTTTGGACCTGGCTGAGTCAGATGCCATGGAGGGGCTGCT
GAAGGCAGAGATCACTCGCCGAGGTGTGGATGTCGAGGCAGCCAAGCGGGCTGAAGAAGAATTGCTGCTT
CATGACACAAGGTGCTGGCTGAATGGGGGTGCTATGCCAGAGGCCAGGCACCCCCGGACTGGGGCCTCTG
CCCTGCATGTGGCTGCTGCCAAGGGCTACATCGAGGTGATGAGGTTGCTACTCCAAGCTGGCTATGACAC
AGAGCTCCGGGATGGAGATGGCTGGACACCCTTGCATGCAGCAGCCCACTGGGGTGTGGAGGATGCCTGC
CGTCTGCTGGCTGAGCATGGCGGGGGCATGGATTCGCTGACCCACGCGGGGCAGCGTCCCTGTGACCTGG
CTGACGAGGACGTGATGAACCTTTTGGAGGAACTGGCTCAGAAACAGGAGGACCTTCGGAACCAAAAGGA
AGGCTCCCAGGGCCGAGGCCAGGAGTCACAGGTCCCTTCAAGTAGTAAGCACAGAAGGAGCTCCGTGTGC
CGTTTGAGCAGCCGAGAGAAGATCTCCTTGCAGGATCTATCAAAGGAGCGCCGGCCTGGTGGGGCAGGAG
GGCCTCCTATTGGAGATGAGGATGAGGGAGGTGAAGCGTCAGCTGAGCACCCAGCTGTGGAACCAAGAGC
CCTCAATGGTGTGTCTTCCCCTGTGTCCTCCAACCCTAAGAGCCCTGTGCTGCCAGAAGAGGCTCCCTTT
TCCAGGCGCTTTGGTCTCCAGAAGACAGGGAGCACTGGTGCCTTGGGTCCTTCAGAAAGGAGGGCTACAG
AGGGCGTTCTCGGTCTGCAGCGCTCAGCCTCCTCCTCCCTCCTTGAGAAGGCCTCCACTCAGGCCAGGGA
GCCCCGTCTTGCCAGAATAACCCCTACCCCTGCCCAGAAAGTGCCAGAGCCCTTCACCCTGTATGAGGCT
GCCACGCCTCCTTCTTTGGATCACTCTGTTCCACCCTCCAGGAGGGAGCCTGGATCGATAGTGAAGCCAA
ATGTCCTCACAGCCTCTGCAGCGCCCCTGGCCGACTCCAGGGACCGTCGGAGGTCCTACCAGATGCCTGT
GCGTGATGAGGAGTCCGAGTCTCAGCGGAAGGCCCGCTCCCGCCTTATGCGACAGTCTCGGAGGTCCACA
CAGGGTGTAACTCTAACAGACTTGAAGGAAGCAGAAAAGGTGGCTGGGAAGGTCCCAGAGCCAGAGCAGC
CTGCCCTACCCAGCCTGGACCCTTCTCGGAGACCTCGGGTCCCTGGAGTGGAGAACGCTGAGGGCCCTGC
CCAGAGAGAGGCGCCCGAAGGGCAGGGCCAGGGACCACAGGCGGCCAGGGAGCATCGAAAAGCTGGCCAT
GAGCGGAGGGGGCCAGCAGAGGGGGAAGAGGCGGGGCCTGCGGAACGGAGCCCAGAGTGCAGCACTGTGG
ATGGTGGATCCCAGGTCCGCAGGCAGCACTCACAGAGAGACCTCGTTCTAGAATCCAAGCAGGAGCACGA
GGAGCCTGATGGAGGCTTCCGGAAGATGTACACGGAGCTCCGCAGGGAGAATGAGCGACTTCGTGAGGCC
CTGACAGAGACCACCCTGCGTCTGGCACAGCTCAAGGTGGAGCTGGAGCGGGCCACGCAGCGGCAGGAAC
GCTTTGCTGAGAGGCCCGCCCTCCTTGAACTGGAGAGATTTGAGCGCAGGGCTCTGGAGCGCAAGGCAGC
AGAGCTGGAAGAGGAGCTGAAGGCCCTCTCTGATCTCCGGGCTGACAACCAGCGGCTCAAGGATGAGAAT
GCAGCATTGATCCGAGTCATCAGCAAACTATCCAAGTGA

Translation (782 aa):
MSGEDGPAAGPGAAAAAAAARERRQEQLRQWGARAGADPGPGERRARTVRFERAAEFLAACAGGDLDEAR
LMLRAADPGPGSGAASDPAVPPPARAVLDSTNADGISALHQACIDENLEVVRFLVEQGATVNQADNEGWT
PLHVAASCGYLDIARYLLSHGANIAAVNSDGDLPLDLAESDAMEGLLKAEITRRGVDVEAAKRAEEELLL
HDTRCWLNGGAMPEARHPRTGASALHVAAAKGYIEVMRLLLQAGYDTELRDGDGWTPLHAAAHWGVEDAC
RLLAEHGGGMDSLTHAGQRPCDLADEDVMNLLEELAQKQEDLRNQKEGSQGRGQESQVPSSSKHRRSSVC
RLSSREKISLQDLSKERRPGGAGGPPIGDEDEGGEASAEHPAVEPRALNGVSSPVSSNPKSPVLPEEAPF
SRRFGLQKTGSTGALGPSERRATEGVLGLQRSASSSLLEKASTQAREPRLARITPTPAQKVPEPFTLYEA
ATPPSLDHSVPPSRREPGSIVKPNVLTASAAPLADSRDRRRSYQMPVRDEESESQRKARSRLMRQSRRST
QGVTLTDLKEAEKVAGKVPEPEQPALPSLDPSRRPRVPGVENAEGPAQREAPEGQGQGPQAAREHRKAGH
ERRGPAEGEEAGPAERSPECSTVDGGSQVRRQHSQRDLVLESKQEHEEPDGGFRKMYTELRRENERLREA
LTETTLRLAQLKVELERATQRQERFAERPALLELERFERRALERKAAELEEELKALSDLRADNQRLKDEN
AALIRVISKLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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