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Report for CCDS39744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39744.1 Public Mus musculus 7 Zfp579 23 108 98 CCDS HistoryNCBI Gene:68490Re-query CCDS DB by CCDS ID:39744.1Re-query CCDS DB by GeneID:68490See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108572.1 ENSMUSP00000104212.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108572.1Link to Ensembl Protein Viewer:ENSMUSP00000104212.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108572Re-query CCDS DB by Protein ID:ENSMUSP00000104212
Original member Current member EBI ENSMUST00000162731.1 ENSMUSP00000123963.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162731.1Link to Ensembl Protein Viewer:ENSMUSP00000123963.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162731Re-query CCDS DB by Protein ID:ENSMUSP00000123963
Original member Current member NCBI NM_026741.2 NP_081017.1 Accepted alive Link to Nucleotide Sequence:NM_026741.2Link to Protein Sequence:NP_081017.1Re-query CCDS DB by Nucleotide ID:NM_026741Re-query CCDS DB by Protein ID:NP_081017Link to BLAST:NP_081017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081017.1 562 Q80VM4 562 100% 0 0

Chromosomal Locations for CCDS 39744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4993222 4994910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGGATCCACAGCCCCCTCCACCCGCCCAGGGCAGCCCACCTCACCGTGACCGTGGCCGAGGCCGAGGCC
GTGGCCGTGGCCGTGGCCGAGGCCGTGGTCGTGGCAGAGGGGGTGCTGGAGCCCCTAGGGCGCCTCTGCC
CTGCCCAACCTGTGGTCGCCTCTTCCGCTTCCCTTACTACCTGTCTCGACACCGGCTGAGCCACTCGGGT
CTCCGGCCCCATGCCTGCCCTCTGTGCCCCAAAGCTTTCCGCAGGCCTGCCCACCTTTCCCGCCACCTTC
GTGGCCACGGGCCCCAGCCCCCGCTGCGCTGCGCTGCCTGCCCACGCACCTTCCCGGAGCCAGCCCAGCT
CAGGCGCCACCTGGCCCAAGAGCACGCAGGTAGCGAGGTGGATCTGTCCACGCAGAGGGCAGTGAAGGAG
GAGCCTGAGGCCAGTTGGGGTCCGCAGGACGAGGGAGTGGAACAGCCCGCCACGGTGGTGGTGGCCGGGG
CTGAGGAGGAGGCGACCACACAGTGGCCCGCAGGGGACTCGGCTCCTGCGGCTGTCCCCACGAGTACGGA
TCCTCGGGAATCAGAGGCCAAGGAGGCCGAGGCCGGGGCAGCGGAGCTAAGGGCAGAGTTGGCACTGGCC
GCGGGGCGACAGGAGGAGAAACAGGTCCTTCTCCAGGCCGACTGGACGCTGCTGTGTCTCCGCTGTCGCG
AAGCCTTCGCCACCAAGGGGGAGCTCAAAGCCCACCCGTGTCTGCGCCCCGAGGGCGAACAGGAGGGCGA
AGGAGGACCCCCGCCCCGCCCCAAGCGACACCAGTGTTCCATCTGCCTCAAGGCTTTCGCCAGGCCCTGG
TCCCTATCGCGTCACCGGCTAGTCCACTCCACCGATCGACCTTTTGTGTGTCCAGACTGCGGCCTGGCCT
TCCGCTTGGCCTCCTACCTCCGCCAGCACCGCCGCGTCCATGGTCCACTCAGCCTGCTGGCCCCGTTACC
CGGGGCCGGCAAGAAGGATGACAAGGCCTCGGGCGGACGGAACTCAGGGAAAGGGCCCGAGGGGGGCGAA
GGGGCAGAATGTGGGGGTGCATCGGAAGGGGGTGAAGGCGGGCATAATGGAGGAGATGCCACCCCAGCCC
GGCCTCCGGCGGGGGAGCCACGTTTCTGGTGTCCTGAGTGTGGCAAAGGTTTCCGACGCCGGGCACACCT
ACGCCAGCATGGGGTCACCCACTCCGGGGCGCGCCCTTTTCAGTGCGTGCGCTGCCAGAGGGAATTCAAG
CGACTGGCGGACCTGGCCCGCCACGCGCAAGTCCATGCTGGGGGTCCCGCCCCGCATCCGTGCCCGCGAT
GCCCACGCCGCTTCTCTCGCGCTTACAGCCTCCTGCGCCACCAACGCTGCCACCGCGCCGAGCTGGAACG
GGCGGAGCTGGAGAGGGCTGCAGCGCTGCAGGAACTCCAGACCCAGGCCTCACAGTCGCCCCAGCCTCCG
CAGCCACTTAAGCAGGAGGCAGAAGGGCTCCCTCTGCCCATCGCGCACATCAAGGAAGAGCCTCCCTCAC
CTGGCACACCACCCCAGTCCCCGCCGGCTCCACCTGTCTTTCTCAGCGCCTCCTGTTTTGACAGCCAAGA
CCATTCAGCCTTCGAGATGGAGGATGAGGAGATGGACAGTAAGGCCCACCTATGCGGATTGGGAGGCCTG
GCCTCCTGA

Translation (562 aa):
MDPQPPPPAQGSPPHRDRGRGRGRGRGRGRGRGRGRGGAGAPRAPLPCPTCGRLFRFPYYLSRHRLSHSG
LRPHACPLCPKAFRRPAHLSRHLRGHGPQPPLRCAACPRTFPEPAQLRRHLAQEHAGSEVDLSTQRAVKE
EPEASWGPQDEGVEQPATVVVAGAEEEATTQWPAGDSAPAAVPTSTDPRESEAKEAEAGAAELRAELALA
AGRQEEKQVLLQADWTLLCLRCREAFATKGELKAHPCLRPEGEQEGEGGPPPRPKRHQCSICLKAFARPW
SLSRHRLVHSTDRPFVCPDCGLAFRLASYLRQHRRVHGPLSLLAPLPGAGKKDDKASGGRNSGKGPEGGE
GAECGGASEGGEGGHNGGDATPARPPAGEPRFWCPECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREFK
RLADLARHAQVHAGGPAPHPCPRCPRRFSRAYSLLRHQRCHRAELERAELERAAALQELQTQASQSPQPP
QPLKQEAEGLPLPIAHIKEEPPSPGTPPQSPPAPPVFLSASCFDSQDHSAFEMEDEEMDSKAHLCGLGGL
AS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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