NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS39797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39797.1 Public Mus musculus 7 Rtn2 23 108 98 CCDS HistoryNCBI Gene:20167Re-query CCDS DB by CCDS ID:39797.1Re-query CCDS DB by GeneID:20167See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108468.4 ENSMUSP00000104108.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108468.4Link to Ensembl Protein Viewer:ENSMUSP00000104108.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000108468Re-query CCDS DB by Protein ID:ENSMUSP00000104108
Original member Current member NCBI NM_001025364.3 NP_001020535.1 Accepted alive Link to Nucleotide Sequence:NM_001025364.3Link to Protein Sequence:NP_001020535.1Re-query CCDS DB by Nucleotide ID:NM_001025364Re-query CCDS DB by Protein ID:NP_001020535Link to BLAST:NP_001020535.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020535.1 204 O70622-2 204 100% 0 0

Chromosomal Locations for CCDS 39797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19291164 19291176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293076 19293283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293603 19293741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19293848 19293917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19294419 19294465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19295451 19295509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19295716 19295794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGGGAGTAAAGTGGCAGACCTGTTGTACTGGAAGGACACCAGGACGTCGGGAGCGGTCTTCACGGGCC
TCATGGCCTCTCTCCTCTGCCTCCTGCACTTTAGCATCGTGTCCGTGGCTGCGCACCTGGCCCTGTTGGG
TCTCTGCGCCACCATCTCTCTCAGGGTTTACCGCAAAGTGCTGCAGGCCGTGCACCGGGGCGACGGCACC
AACCCTTTCCAGGCCTACCTGGACATGGACCTGACCCTGACTCGGGAGCAGACAGAACGTTTGTCCCAGC
AGATCGCCTCCCACGTGGTCTCCACAGCCACACAGCTACGGCATTTCTTCCTAGTGGAAGACCTGGTGGA
TTCTCTCAAGCTGGCTCTTCTCTTCTACATCTTGACCTTTGTGGGAGCCATCTTCAACGGCTTGACTCTT
GTCATCCTAGGAGTGGTTGCTTTGTTTACCGTCCCCCTTCTGTACAGACAACATCAGGCCCAGATTGACC
AGTATGTGGGGTTGGTGACCAATCAGTTGAGCCACATCAAAGCTAAGATCCGAGCTAAGATCCCGGGGAC
CGGAACCCTTGCCCCAACAGCATCAGTCTCCGGATCCAAAGCCAAAGCCGAATGA

Translation (204 aa):
MGSKVADLLYWKDTRTSGAVFTGLMASLLCLLHFSIVSVAAHLALLGLCATISLRVYRKVLQAVHRGDGT
NPFQAYLDMDLTLTREQTERLSQQIASHVVSTATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTL
VILGVVALFTVPLLYRQHQAQIDQYVGLVTNQLSHIKAKIRAKIPGTGTLAPTASVSGSKAKAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH