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Report for CCDS40042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40042.1 Public Mus musculus 7 Arap1 23 108 98 CCDS HistoryNCBI Gene:69710Re-query CCDS DB by CCDS ID:40042.1Re-query CCDS DB by GeneID:69710See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40042.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098243.3 ENSMUSP00000095844.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098243.3Link to Ensembl Protein Viewer:ENSMUSP00000095844.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098243Re-query CCDS DB by Protein ID:ENSMUSP00000095844
Original member NCBI NM_198096.1 NP_932764.1 Updated not alive Link to Nucleotide Sequence:NM_198096.1Link to Protein Sequence:NP_932764.1Re-query CCDS DB by Nucleotide ID:NM_198096Re-query CCDS DB by Protein ID:NP_932764
Current member NCBI NM_198096.2 NP_932764.1 Accepted alive Link to Nucleotide Sequence:NM_198096.2Link to Protein Sequence:NP_932764.1Re-query CCDS DB by Nucleotide ID:NM_198096Re-query CCDS DB by Protein ID:NP_932764Link to BLAST:NP_932764.1

Chromosomal Locations for CCDS 40042.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101394878 101394908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101396061 101396195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101398296 101398431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101398696 101398798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101399479 101399674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101399983 101400034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101400128 101400291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101400392 101400604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101400883 101400988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101401390 101401537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101401623 101401709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101401792 101401860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101402059 101402176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101403965 101404078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101404280 101404425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101408047 101408129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101409114 101409164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101409291 101409354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101410920 101411069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101411304 101411321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGAGTTTCTACGGAATAATCAGAGTACAGAGGTCCCTCGGTTGGACTCAGTGAAGCCCTTGGAAAAGC
ACTACTCCGTTACCCTGCCAACTGTGAGCCACAGCGGCTTCCTGTACAAAACTGCTTCTGCCGGCAAACC
TCTGCAGGACCGCCGTGCCCGGGAAGAGTTCAGCCGGCGCTGGTGTGTCCTGAGTGATGGGGTCCTGAGC
TACTATGAAAACGAACGGGCAGTGACACCCAATGGGGAGATTCGGGCCAGCGAGATAGTATGCCTAGCAG
TTTCCCCTCTGGACACCCATGGCTTTGAGCACACCTTTGAGGTGTACACAGAGGGAGAACGGCTGTACCT
GTTTGGGCTGGAGAATGCAGAGCTGGCTCATGAGTGGGTCAAGTGCATTGCCAAGGCGTTCGTGCCTCCC
CTGGCTGAGGACCTGCTAGCCCGGGACTTTGAACGTCTTGGGCGCCTACCCTGTAAAGCTGGCCTGAGCC
TTCAGCAGGCTCAGGAAGGCTGGTTTGCCTTGACTGGCTCTGAGCTCCGGGCTGTCTTCCCAGAGGGGCC
CTGGGAAGAGCCGCTGCAGCTCCGGAAACTGCAAGAGCTTTCTATCCAAGGAGACAGCGAGAACCAAGTG
CTGGTGCTGGTGGAGCGGAGGAGGACACTGTACATCCAGGGTGAGCGGCGGCTGGACTTCATGGCTTGGC
TAGGGGTCATCCAGAAAGCAGCAGCCAGCTTGGGAGACACACTATCAGAACAACAGCTTGGGGACTCGGA
CATCCCAGTGATTGTGTACCGCTGTGTGGACTACATCACGCAGTGTGGCTTGACCTCAGAGGGTATCTAT
CGAAAGTGTGGTCAGACCTCCAAGACTCAGAGACTGCTAGACAGCCTCCGGCAGGACGCACGCTCTGTGC
ACCTAAAGGAGGGAGAACAGCACGTGGACGACGTCTCCTCTGCACTCAAACGCTTCCTCAGGGACCTGCC
CGATGGGCTCTTCACGCGTGCGCAGCGCCTGGCCTGGCTGGAGGCCTCTGAGATCGAGGATGAGGAAGAA
AAGATCTCCAGGTATCGAGAGCTCTTGGTGCATCTGCCCCCTGTCAACCGGGCCACTGTGAAGGCCCTTA
TCAGCCATCTGTACTGTGTACAGTGCTTCTCAGACACAAACCAAATGAACACACACAACCTGGCTATCGT
GTTTGGGCCTACACTCTTCCAGACAGACGGGCAGGACTACAAGGCCGGCAAGGTGGTGGAAGACCTCATC
AACCACTACGTGGTGGTGTTCAGTGTGGACGAGGAGGAGCTGAGGAAGCAGAGGGAGGAAGTCACGGCCA
TCGTGAAGATGCGAGTGGCTGGCACTGCCAGTGGGACCCAGCATGCTGGCGACTTCATCTGCACAGTCTA
CCTGGAGGAGAAGAAGGTGGAGACTGAACAGCATGTTAAGATCCCAGCATCCATGACTGCAGAGGAGCTT
ACTCTGGAGATTCTGGACCGCCGCAATGTGAGCATCAGGGAGAAGGACTACTGGACTTGCTTTGAGGTCA
ACGAGAAGGAGGAGGCAGAGCGCCCGCTGCACTTTGCAGAGAAGGTGCTGCCCATTGTCCATGGGCTGGG
CATAGACAGCCATCTGGTGGTGAAGAAGTACCAGTCCATGGAGGCCATGCTGTTGTACTTGGCCAGCCGT
GTGGGTGACACCAAGCATGGTATGATGAAGTTCCGTGAAGACCGCAGCCTCCTGGGTCTGGGGCTACCTT
CGGGTGGCTTCCACGATCGCTACTTCATTCTCAACAGCAGCTGCCTACGGCTCTACAAGGAGGTCCGGAG
TCACCGGCCTGAGAAGGAGTGGCCTGTCAAGAGCCTCAAAGTCTACCTGGGTGTAAAGAAGAAACTGCGG
CCACCTACTTGCTGGGGCTTCACGGTGGTGCACGAGACAGAAAAGCACGAGAAGCAGCAGTGGTACCTCT
GCTGTGACACGCAGATGGAACTTCGAGAGTGGTTTGCCACCTTCCTCTCTGTGCAGCACGATGGCCTGGT
GTGGCCCTCCGAGCCATCTCGAGTGTCCCGGGCAGTGCCTGAGGTCCGGATGGGCAGTGTATCGCTGATC
CCTCTACGAGGCAGTGAAAATGAAATGCGCCGGAGTGTGGCAGCCTTCACTGCTGACCCCCTTTCCCTTC
TCCGCCATGTCTGA

Translation (727 aa):
MEFLRNNQSTEVPRLDSVKPLEKHYSVTLPTVSHSGFLYKTASAGKPLQDRRAREEFSRRWCVLSDGVLS
YYENERAVTPNGEIRASEIVCLAVSPLDTHGFEHTFEVYTEGERLYLFGLENAELAHEWVKCIAKAFVPP
LAEDLLARDFERLGRLPCKAGLSLQQAQEGWFALTGSELRAVFPEGPWEEPLQLRKLQELSIQGDSENQV
LVLVERRRTLYIQGERRLDFMAWLGVIQKAAASLGDTLSEQQLGDSDIPVIVYRCVDYITQCGLTSEGIY
RKCGQTSKTQRLLDSLRQDARSVHLKEGEQHVDDVSSALKRFLRDLPDGLFTRAQRLAWLEASEIEDEEE
KISRYRELLVHLPPVNRATVKALISHLYCVQCFSDTNQMNTHNLAIVFGPTLFQTDGQDYKAGKVVEDLI
NHYVVVFSVDEEELRKQREEVTAIVKMRVAGTASGTQHAGDFICTVYLEEKKVETEQHVKIPASMTAEEL
TLEILDRRNVSIREKDYWTCFEVNEKEEAERPLHFAEKVLPIVHGLGIDSHLVVKKYQSMEAMLLYLASR
VGDTKHGMMKFREDRSLLGLGLPSGGFHDRYFILNSSCLRLYKEVRSHRPEKEWPVKSLKVYLGVKKKLR
PPTCWGFTVVHETEKHEKQQWYLCCDTQMELREWFATFLSVQHDGLVWPSEPSRVSRAVPEVRMGSVSLI
PLRGSENEMRRSVAAFTADPLSLLRHV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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