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Report for CCDS40439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40439.1 Public Mus musculus 8 Psme3ip1 23 108 98 CCDS HistoryNCBI Gene:102122Re-query CCDS DB by CCDS ID:40439.1Re-query CCDS DB by GeneID:102122See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40439.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034226.7 ENSMUSP00000034226.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034226.7Link to Ensembl Protein Viewer:ENSMUSP00000034226.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034226Re-query CCDS DB by Protein ID:ENSMUSP00000034226
Original member Current member NCBI NM_001363456.1 NP_001350385.1 Accepted alive Link to Nucleotide Sequence:NM_001363456.1Link to Protein Sequence:NP_001350385.1Re-query CCDS DB by Nucleotide ID:NM_001363456Re-query CCDS DB by Protein ID:NP_001350385Link to BLAST:NP_001350385.1
Original member Current member NCBI NM_028221.4 NP_082497.2 Accepted alive Link to Nucleotide Sequence:NM_028221.4Link to Protein Sequence:NP_082497.2Re-query CCDS DB by Nucleotide ID:NM_028221Re-query CCDS DB by Protein ID:NP_082497Link to BLAST:NP_082497.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350385.1 254 Q91WE2 254 100% 0 0
NP_082497.2 254 Q91WE2 254 100% 0 0

Chromosomal Locations for CCDS 40439.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 94575637 94575857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94579400 94579464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94582884 94583014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94587324 94587445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94588003 94588101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 94588776 94588902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGGATGGAGAGGACGATAGTAACCTTGTCATCAAAAAGAGGTTTGTGTCTGAGGCAGAGCTAGATGAGC
GGCGCAAAAGGAGGCAAGAAGAATGGGAGAAAGTGCGAAAACCAGAAGACCCAAAAGAATGTCCAGAGGA
GGCGTATGACCCTCGGTCTCTGTACGAACGGCTGCAGGAACAGAAAGACAGGAAGCAGCAGGAGTATGAG
GAGCAATTCAAATTCAAAAACATGGTAAGAGGGTTAGACGAAGATGAGACCAACTTCCTTGATGAGGTTT
CTCGGCAGCAGGAGCTGATAGAGAAGCAGCGGCGAGAAGAAGAACTAGAGGAACTGAAGGAGTACAGAAG
TAATCTCAACAAGGTTGGAATTTCTGCAGAAAATAAAGAAGTAGAGAAGAAGCTGGCCGTGAAACCCATA
GAAACCAAGAACAAGTTCTCCCAGGCAAAGCTGTTGGCAGGAGCTGTGAAACATAAGAGCTCAGAGAGTG
GCAATAGTGTGAAGAGACTGAAACCAGACCCCGACCCAGATGACAAGGCTCAAGAGGCCCCGTCCTGCAT
GTCTCTTGGAAGCTCTTCTCTGAGCGGACCTCCCTCCATCCACTGCCCGTCGGCTGCTGTGTGCATCGGC
ATCCTCCCTGGCTTGGGCGCCTACTCTGGGAGCAGTGACTCCGAATCCAGTTCAGACAGTGAAGGCACCA
TCAATGCTACAGGGAAGATCGTCTCCTCCATCTTCCGAACCAACACCTTCCTCGAGGCACCCTAG

Translation (254 aa):
MDGEDDSNLVIKKRFVSEAELDERRKRRQEEWEKVRKPEDPKECPEEAYDPRSLYERLQEQKDRKQQEYE
EQFKFKNMVRGLDEDETNFLDEVSRQQELIEKQRREEELEELKEYRSNLNKVGISAENKEVEKKLAVKPI
ETKNKFSQAKLLAGAVKHKSSESGNSVKRLKPDPDPDDKAQEAPSCMSLGSSSLSGPPSIHCPSAAVCIG
ILPGLGAYSGSSDSESSSDSEGTINATGKIVSSIFRTNTFLEAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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