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Report for CCDS40535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40535.1 Public Mus musculus 9 Amotl1 23 108 98 CCDS HistoryNCBI Gene:75723Re-query CCDS DB by CCDS ID:40535.1Re-query CCDS DB by GeneID:75723See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 40535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013220.7 ENSMUSP00000013220.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013220.7Link to Ensembl Protein Viewer:ENSMUSP00000013220.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000013220Re-query CCDS DB by Protein ID:ENSMUSP00000013220
Original member Current member NCBI NM_001081395.1 NP_001074864.1 Accepted alive Link to Nucleotide Sequence:NM_001081395.1Link to Protein Sequence:NP_001074864.1Re-query CCDS DB by Nucleotide ID:NM_001081395Re-query CCDS DB by Protein ID:NP_001074864Link to BLAST:NP_001074864.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074864.1 968 Q9D4H4-1 968 100% 0 0

Chromosomal Locations for CCDS 40535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 14547792 14547898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14548531 14548806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14550392 14550621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14551622 14551747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14555574 14555764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14558459 14558608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14562075 14562220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14571623 14571712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14572675 14572819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14575151 14575439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14592754 14593711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14596451 14596600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 14614734 14614782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2907 nt):
ATGCGGAGGGCAAAGTCGCGCCGGGGACCTTGCGAGCCTGTGCTTAGAGCTCCTCCTCCCATCTGCTACA
GCCCCAGCAGTCCTGTGCAGATTCTAGAAGACCCCGCCTACTTCTACCCAGACTTGCAGCTCTATTCTGG
GAGGCATGAAGCATCTACTTTGACAGTGGAGGCAAGTGGAGGCCTAAGGGGGAAAAGCGTAGAGGACCCT
CTCTCCAGCTTCCACTCCCCGAACTTCCTGAGGACGCCCGAGGTGGAAATGAGAGGTTCTGAGGATGTAG
CCTCTGGAAGAGTGTTACAGCGGCTGATCCAGGAACAACTGCGCTATGGCACCCCAACTGAGAACATGAA
CCTGCTGGCCATTCAGCACCAGGCCACAGGGAGTGCAGGGCCAGCCCACGCCACCACCAACTTTTCTTCC
ACGGAAACCCTCACTCAAGAAGATCCACAAATGGTCTATCAGTCGGCCCGCCAAGAACCGCAGGGTCAAG
AGCATCAGGGAGACAATACGGTGATGGAGAAGCAGGTCCGGTCCACACAGCCTCAGCAGAACAACGAGGA
GCTCCCCACGTATGAGGAAGCCAAGGCCCAGTCCCAGTTCTTCAGGGGACAGCAGCAGCAGCAGCAACAG
CAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGGGACAGGGGCCCCTTAGCCACACTTATTACATGGCCG
GAGGTACCAGTCAGAAGTCCCGCACTGAGGGGAGGCCCACAGTGAACCGGGCCAACAGTGGACAGGCGCA
TAAGGATGAGGCCCTGAAAGAACTAAAGCAGGGCCATGTCCGGTCCCTCAGTGAGAGGATCATGCAGCTG
TCACTGGAGAGGAATGGGGCTAAGCAACACCTCCCCAGCTCTGGAAATGGAAAGAGCTTCAAAGCTGGAG
GAGAGCCATCCCCAGCTCAGCCTGTCTGTAAAGCACTGGACCCTCGTGGCCCTCCACCTGAATACCCCTT
CAAGACCAAGCCAATGAAATCCCCAGTCAGCAAGAACCAAGATCACGGTCTTTACTACAATGACCAGCAC
CCTGGGGTACTCCATGAGATGGTCAAACCTTACCCAGCACCTCAGCCTGCGAGAACAGAAGTGGCCGTCC
TGAGGTATCAGCCACCCCCGGAGTATGGCGTCACCAGCCGGCCCTGCCAGCTGCCTTTTCCATCTACGGT
GCAGCAGCATAGCCCCATGTCCTCTCAGACCTCCTCCATCGGTGGTACTCTGCACTCCGTCTCCCTGCCT
CTTCCACTTCCCATAAGCCTGGCGGCTTCACAGCCCCTACCAGCCTCCCCCAACCAGCAGCTTGGACCGG
ATGCCTTTGCGATTGTGGAGCGAGCCCAGCAAATGGTAGAGATCCTGACAGAGGAGAACCGTGTGCTTCA
CCAGGAGCTTCAGGGCTGCTATGACAACGCTGACAAGCTCCACAAGTTTGAAAAAGAGCTGCAGAGTATT
TCGGAGGCCTACGAGAGCCTGGTCAAGTCCACCACCAAGCGTGAGTCTCTGGACAAGGCAATGAGAACCA
AGCTCGAAGGCGAGATAAGGAGACTTCATGACTTCAACAGAGATCTCCGAGATCGACTGGAGACAGCCAA
CAGGCAGCTGTCCAGCAGGGAATACGATGGGCATGAAGACAAAGCTGCAGAGAGCCATTACGTGTCCCAG
AACAAAGAATTCTTGAAGGAAAAGGAAAAGTTGGAAATGGAGTTGGCAGCAGTGCGTACGGCAAGTGAGG
ACCATCGGAGGCACATCGAGATCCTGGACCAGGCTTTGAGCAATGCGCAGGCTAGAGTGATCAAACTGGA
GGAAGAGTTACGAGAGAAGCAAGCCTATGTGGAAAAGGTGGAGAAGCTGCAGCAGGCCCTGACCCAGCTG
CAGTCAGCGTGCGAGAAGCGAGGGCAGATGGAACGCAGGTTGCGGACCTGGCTGGAGAGGGAGCTAGACG
CTCTGAGGACACAGCAGAAACATGGCACAGGCCCTCCAGTCAGTCTCCCAGAATGTAATGCTCCTGCCCT
CATGGAGCTGGTGAGGGAGAAGGAGGAGCGGATCCTCGCCTTGGAGGCCGACATGACCAAGTGGGAGCAG
AAGTACCTGGAAGAGAGCACCATCCGGCACTTTGCCATGAGCGCAGCTGCCGCTGCCACAGCCGAGAGGG
ACACCACCATCAGCAACCACTCGAGGAATGGCAGCTATGGGGAGAGCTCCCTGGAGGCCCACATCTGGCC
AGAGGAAGAAGAAGTGGTGCAGGCCAACAGGAGGTGTCAGGACATGGAGTACACTATTAAAAACCTCCAT
GCCAAAATCATAGAGAAGGATGCCATGATAAAGGTCCTGCAGCAGCGATCCCGTAAGGATGCTGGGAAGA
CGGACTCTGCCAGCCTGAGGCCTGCCCGCTCTGTCCCATCCATCGCTGCGGCCACTGGGACACATTCTCG
CCAGACTTCTCTTACCAGCAGCCAGCTGACAGAAGAGAAAAAGGAAGAGAAGACGACCTGGAAAGGGAGT
ATAGGATTCCTGCTGGGAAAGGAACACCAGGGACAGGCATCTGCCCCTCTGCTGCCGACCACACCTGCCT
CTGCATTGTCCCTTCCGGCCTCTACCACATCGGCCAGCAGCACCCACGCCAAGACGGGCAGCAAGGACAG
CAGCACACAGACCGACAAGAGCACGGAGCTCTTCTGGCCCAGCATGGCTTCCCTCCCCAGCCGTGGCAGG
CTGAGCACAGCCCCTTCCAACAGCCCCATCCTAAAGCATCCAGCTGCCAAAGGAGCCGTGGAGAAGCAGG
AGAACTCTCCTGGTCATGGGAAGGCATCGGAGCACAGAGGCCGAGTCAGCAACTTGCTGCACAAGCCTGA
GTTCCCAGATGGCGAGATGATGGAAGTGCTCATCTAG

Translation (968 aa):
MRRAKSRRGPCEPVLRAPPPICYSPSSPVQILEDPAYFYPDLQLYSGRHEASTLTVEASGGLRGKSVEDP
LSSFHSPNFLRTPEVEMRGSEDVASGRVLQRLIQEQLRYGTPTENMNLLAIQHQATGSAGPAHATTNFSS
TETLTQEDPQMVYQSARQEPQGQEHQGDNTVMEKQVRSTQPQQNNEELPTYEEAKAQSQFFRGQQQQQQQ
QQQQQQQQQQQGQGPLSHTYYMAGGTSQKSRTEGRPTVNRANSGQAHKDEALKELKQGHVRSLSERIMQL
SLERNGAKQHLPSSGNGKSFKAGGEPSPAQPVCKALDPRGPPPEYPFKTKPMKSPVSKNQDHGLYYNDQH
PGVLHEMVKPYPAPQPARTEVAVLRYQPPPEYGVTSRPCQLPFPSTVQQHSPMSSQTSSIGGTLHSVSLP
LPLPISLAASQPLPASPNQQLGPDAFAIVERAQQMVEILTEENRVLHQELQGCYDNADKLHKFEKELQSI
SEAYESLVKSTTKRESLDKAMRTKLEGEIRRLHDFNRDLRDRLETANRQLSSREYDGHEDKAAESHYVSQ
NKEFLKEKEKLEMELAAVRTASEDHRRHIEILDQALSNAQARVIKLEEELREKQAYVEKVEKLQQALTQL
QSACEKRGQMERRLRTWLERELDALRTQQKHGTGPPVSLPECNAPALMELVREKEERILALEADMTKWEQ
KYLEESTIRHFAMSAAAAATAERDTTISNHSRNGSYGESSLEAHIWPEEEEVVQANRRCQDMEYTIKNLH
AKIIEKDAMIKVLQQRSRKDAGKTDSASLRPARSVPSIAAATGTHSRQTSLTSSQLTEEKKEEKTTWKGS
IGFLLGKEHQGQASAPLLPTTPASALSLPASTTSASSTHAKTGSKDSSTQTDKSTELFWPSMASLPSRGR
LSTAPSNSPILKHPAAKGAVEKQENSPGHGKASEHRGRVSNLLHKPEFPDGEMMEVLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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