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Report for CCDS40661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40661.1 Public Mus musculus 9 Thsd4 23 108 98 CCDS HistoryNCBI Gene:207596Re-query CCDS DB by CCDS ID:40661.1Re-query CCDS DB by GeneID:207596See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098660.9 ENSMUSP00000096257.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098660.9Link to Ensembl Protein Viewer:ENSMUSP00000096257.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098660Re-query CCDS DB by Protein ID:ENSMUSP00000096257
Original member Current member EBI ENSMUST00000171654.7 ENSMUSP00000131418.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171654.7Link to Ensembl Protein Viewer:ENSMUSP00000131418.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171654Re-query CCDS DB by Protein ID:ENSMUSP00000131418
Original member Current member NCBI NM_001040426.3 NP_001035516.2 Accepted alive Link to Nucleotide Sequence:NM_001040426.3Link to Protein Sequence:NP_001035516.2Re-query CCDS DB by Nucleotide ID:NM_001040426Re-query CCDS DB by Protein ID:NP_001035516Link to BLAST:NP_001035516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035516.2 1018 Q3UTY6-1 1018 100% 0 0

Chromosomal Locations for CCDS 40661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 59972396 59972538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59976188 59976332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59979769 59979948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59982724 59982897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59987259 59987432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59987925 59988129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59988964 59989093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59997006 59997281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 59999941 60000037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60002851 60003026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60056851 60057055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60252650 60252786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60375953 60376055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60394099 60394546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60428164 60428525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60482423 60482495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 60497098 60497126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3057 nt):
ATGGTTTCCTATCTCACGAGCTGTCTCAGTGCCCTGAGCACCCTCCTGCTGCTGCTTGGTTCTCAGCTTG
TCTGCCCGCAGCCTTCCACTGAACACAGAAAGGTCCCACAACGGATGGCAGTGACCGAGGGAACCCCAGA
GGACAGTGGCAGTGGCTCCCCAGGTGTGTGGGGCTCCTGGGGCCCCTGGTCTGCCTGTTCTCGCAGCTGC
AGTGGTGGTGTGATGGAGCAGACACGGCCCTGCCTGCCCAGCTCCTACCGTGCTCGAGGAGGCTCCCGGC
CCAATGGCCGTGCACTGTCCATCACTGGCCACGTTGTGTCAGCCGTACGGACCTCAGTACCACTGCATCG
AAGCCAGGAGGACCAAAGAGCCCTGGCTGGCTCCAATGCTAGCCGCCAAGGCCCTGCAGTGGTGCGAGGC
AGCCGACATCCACAGGCCCGGGGCCGTGAACCCTCAGAGAGAAGGAGCAGGACCCGAGGTCCTATTGGCC
CTGGCAAGTATGGCTATGGGAAGGCTCCCTACATCTTACCACTGCAGACGGATACCACGCATACTCCACA
GAGGCTTCGGAGACAGAGGCCTTCATCCAGGCACTCCAGGTCCCAGGAGGCATCTGCTTCTAAGCAGGGC
TATCGGCCACCAACCCATCAGTTCTCCCACAGCCAACCTCTCTACCAGAGTGACAGTGGCCCTCGCTCTG
GACTGCCACCTTCTGAGGCTTCTATCTACCAGCTGCCCTTGACTCACGACCAAAGCTATCCTGCAGCGTC
GAGTCTCTTCCACAGACCGGAACTGAGCAGCCACCATGGTGCTAGGCCCCACGGGGCAGCTCAAGCCTTT
CCCCAGCATCTGCGATCAACAGCAATCTCCTGCATCGGGGCCTATCGGCAGTACAAACTGTGCAACACCA
ATGCGTGTCCAGAAAGTGGTAGAAGTATCCGGGAGGTACAGTGTGCATCCTACAACAACAAGCCATTCAT
GGGCCGGTTTTATGAATGGGAACCATTTGCAGAAGTAAAGGGTAATCGCAAGTGTGAGCTGAACTGCCAG
GCAACCGGCTACCGCTTCTACGTCCGGCAAGCTGAGAAGGTCATCGATGGCACACCCTGTGATCAGAATG
GCACGGCAATCTGTGTGTCGGGGCAGTGCAAGAGCATTGGCTGTGACGACTTCCTGGGATCTGACAAAGT
CTTGGACAAGTGCGGGGTGTGTGGAGGTGATAACACGGGCTGCCAGGTGGTGTCGGGAGTGTTCAAGCAC
GCCCTCACCAGCCTGGGCTACCACCGGGTTGTAGAGATTCCCCAAGGAGCTACGAAAATTAACATTACAG
AGATGCACAAGAGCAACAACTACTTAGCCTTGCGAAGTCGCTCTGGCCGCTCCATCATCAATGGGAACTG
GGCAATCGATCGCCCGGGGAAGTACGAGGGCGGAGGGACAATGTTCACCTACAAACGACCGAACGAGGTC
TCCAGCACTGCGGGGGAGTCCTTTCTGGCTGAGGGTCCCACTAATGAGATCCTGGATGTCTATATGATAC
ACCAGCAGCCCAACCCAGGAGTCCACTATGAGTACGTGATCATGAGGAATAATGCCATCAGCCCACAGGT
GCCACCACACAGGAGACCAGGAGAACCTTTCAATGGGCAGCTGGAAGAGGAAGACAGAGGCCAGGAGGAC
AGAGAAGAGAGGGAGAAGAACCAGGAAAAGGAAGACTCACAAGTCGAGGCCCCTGAGGTATTCACGTCAG
AATCCACGCAGACCTTCCCAGTCAGGCATCCGGAGAGATTCCCTTCCCACCGACCAGACAACTTGGTGCC
CCCAGCACCACAGCCCCCAAGGCGAAGCCGGGACCACAACTGGAAGCAGCTGGGGACAACAGAATGCTCC
ACCACCTGTGGGAAAGGATCGCAGTACCCTATCTTCCGCTGCGTGCACAGAAACACACACGAGGAGGTTC
CCGAGAGCTACTGTGACTCCAGCATGAAGCCGACCCCAGAGGAGGAACCCTGCAACCTCTTCCCCTGCCC
AGCCTTCTGGGACATCGGGGAGTGGTCGGAGTGCAGCAAGACCTGTGGTCTGGGCATGCAGCACCGCCAG
GTCCTGTGTCGCCAGGTGTATGCCAACCGTAGCCTGACGGTGCAACCCTACCGCTGCCAGCACCTGGAGA
AGCCAGAGACCACCAGCACCTGCCAGCTCAAGATCTGCAGCGAGTGGCAGATTCGGACCGACTGGACCTC
GTGCTCAGTGCCCTGTGGCGTGGGGCAGCGGACCCGAGACGTGAAGTGTGTGAGCAACATCGGGGACATG
GTGCATGACGAGGAGTGCAACATGAAGCTCCGGCCAAATGACATCGAGAACTGTGACATGGGGCCCTGTG
CGAAGAGCTGGTTCCTCACAGAGTGGAGTGAAAGGTGCTCAGCGGAGTGTGGGGCAGGAGTGAGGACACG
TTCAGTGGTGTGCATGACCAACCACGTCAGCAGCCTGCCGTTGGAAGGCTGTGGGAACAACAGGCCAGTG
GAGGCTACGCCGTGTGACAATGGGCCCTGCACAGGCAAGGTGGAGTGGTTCACTGGCAGCTGGAGTCAGT
GTTCCATCGAGTGTGGCAGTGGGACACAGCAGAGGGAAGTGATCTGTGTTAGGAAGAATGCAGACACCTT
TGAAGTGCTAGACCCTTATGAGTGTTCATTCCTGGAGAAGCCCCCAAGCCAGCAGGCCTGCCACCTCAAG
CCTTGTGGAGCTAAATGGTTTAGCACAGAATGGAGCATGTGCTCCAAGAGCTGTCAGGGCGGATTCCGGG
TGCGGGAAGTTCGGTGTCTCTCAGATGACATGACCCCAAGTAGCCTCTGCGACCCCCAGTTGAAACCAGA
AGAGAGAGAGTCTTGTAACACTCAGGACTGTGTCCCTGAAGTTGATGAAAACTGCAAGGACAAGTACTAC
AACTGCAACGTGGTGGTCCAGGCACGCCTCTGTGTCTACAACTACTACAAGACTGCCTGCTGTGCCTCTT
GCACCCGAGTGGCTAACAGACACGTGGGCTTTCTGGGGAGCCGATAA

Translation (1018 aa):
MVSYLTSCLSALSTLLLLLGSQLVCPQPSTEHRKVPQRMAVTEGTPEDSGSGSPGVWGSWGPWSACSRSC
SGGVMEQTRPCLPSSYRARGGSRPNGRALSITGHVVSAVRTSVPLHRSQEDQRALAGSNASRQGPAVVRG
SRHPQARGREPSERRSRTRGPIGPGKYGYGKAPYILPLQTDTTHTPQRLRRQRPSSRHSRSQEASASKQG
YRPPTHQFSHSQPLYQSDSGPRSGLPPSEASIYQLPLTHDQSYPAASSLFHRPELSSHHGARPHGAAQAF
PQHLRSTAISCIGAYRQYKLCNTNACPESGRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQ
ATGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDFLGSDKVLDKCGVCGGDNTGCQVVSGVFKH
ALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEV
SSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMRNNAISPQVPPHRRPGEPFNGQLEEEDRGQED
REEREKNQEKEDSQVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPPAPQPPRRSRDHNWKQLGTTECS
TTCGKGSQYPIFRCVHRNTHEEVPESYCDSSMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQ
VLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDM
VHDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPV
EATPCDNGPCTGKVEWFTGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQACHLK
PCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTPSSLCDPQLKPEERESCNTQDCVPEVDENCKDKYY
NCNVVVQARLCVYNYYKTACCASCTRVANRHVGFLGSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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