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Report for CCDS408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
408.1 Public Homo sapiens 1 LSM10 24 110 108 CCDS HistoryNCBI Gene:84967Re-query CCDS DB by CCDS ID:408.1Re-query CCDS DB by GeneID:84967See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315732.3 ENSP00000319341.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000315732.3Link to Ensembl Protein Viewer:ENSP00000319341.2Re-query CCDS DB by Nucleotide ID:ENST00000315732Re-query CCDS DB by Protein ID:ENSP00000319341
Original member Current member NCBI NM_032881.3 NP_116270.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032881.3Link to Protein Sequence:NP_116270.1Re-query CCDS DB by Nucleotide ID:NM_032881Re-query CCDS DB by Protein ID:NP_116270Link to BLAST:NP_116270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116270.1 123 Q969L4 123 100% 0 0

Chromosomal Locations for CCDS 408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36393758 36394129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGCGGTGAGCCATTCAGTGAAGGAGCGGACCATCTCTGAGAACAGCCTGATCATCCTACTGCAGGGCC
TCCAGGGCCGGGTAACCACTGTGGACCTGCGGGATGAGAGCGTGGCCCACGGACGCATAGACAATGTCGA
TGCTTTCATGAACATCCGCCTGGCCAAAGTCACCTACACGGACCGTTGGGGGCATCAGGTCAAGCTGGAT
GACCTCTTTGTGACAGGCCGCAATGTCCGCTACGTCCACATCCCAGATGACGTGAACATCACCTCGACCA
TTGAGCAGCAGCTGCAGATTATCCATCGGGTGCGAAACTTTGGTGGCAAGGGCCAAGGCCGGTGGGAATT
TCCCCCAAAAAACTGTAAGTGA

Translation (123 aa):
MAVSHSVKERTISENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLD
DLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGKGQGRWEFPPKNCK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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