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Report for CCDS4089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4089.1 Public Homo sapiens 5 RIOK2 24 110 108 CCDS HistoryNCBI Gene:55781Re-query CCDS DB by CCDS ID:4089.1Re-query CCDS DB by GeneID:55781See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000283109.8 ENSP00000283109.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000283109.8Link to Ensembl Protein Viewer:ENSP00000283109.3Re-query CCDS DB by Nucleotide ID:ENST00000283109Re-query CCDS DB by Protein ID:ENSP00000283109
Original member Current member NCBI NM_018343.3 NP_060813.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018343.3Link to Protein Sequence:NP_060813.2Re-query CCDS DB by Nucleotide ID:NM_018343Re-query CCDS DB by Protein ID:NP_060813Link to BLAST:NP_060813.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060813.2 552 Q9BVS4-1 552 100% 0 0

Chromosomal Locations for CCDS 4089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 97163061 97163225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97165051 97165147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97167467 97167991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97168760 97168852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97171206 97171397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97173175 97173263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97177116 97177291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97177732 97177848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97179055 97179193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 97183126 97183191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGGGAAAGTGAATGTGGCCAAGTTGCGTTACATGAGCCGAGATGACTTCAGGGTCTTGACCGCGGTTG
AAATGGGCATGAAGAACCATGAAATTGTTCCCGGCAGTTTGATTGCTTCTATAGCCAGCCTTAAACATGG
TGGCTGTAATAAAGTTTTAAGAGAATTAGTGAAACATAAACTCATAGCTTGGGAGCGTACCAAAACTGTC
CAGGGCTATCGGTTGACAAATGCAGGATATGATTACCTAGCTTTGAAAACACTTTCTTCTAGGCAAGTAG
TTGAGTCTGTTGGAAACCAGATGGGTGTTGGCAAAGAATCAGATATTTACATTGTTGCAAATGAAGAAGG
ACAACAATTTGCATTAAAGCTTCACAGACTAGGAAGAACCTCGTTTCGAAATTTGAAAAACAAACGCGAT
TATCATAAACATAGGCACAATGTGTCATGGCTATATTTATCTCGTCTCTCTGCCATGAAGGAATTTGCCT
ATATGAAGGCATTGTATGAGAGGAAATTTCCAGTTCCAAAGCCAATTGATTACAATCGTCATGCAGTGGT
CATGGAACTCATAAATGGTTATCCACTATGTCAGATACACCATGTTGAAGATCCTGCATCAGTATATGAT
GAAGCTATGGAACTAATTGTCAAACTTGCAAATCATGGGCTGATTCATGGAGATTTTAATGAATTTAATC
TCATTTTGGATGAAAGTGACCATATCACCATGATTGATTTTCCACAGATGGTTTCAACTTCTCATCCCAA
TGCTGAGTGGTATTTTGACAGAGATGTTAAATGCATTAAAGATTTCTTTATGAAACGTTTCAGCTACGAA
AGTGAGCTTTTTCCAACTTTTAAGGATATCAGGAGAGAAGACACTCTTGATGTGGAGGTTTCTGCCAGTG
GCTACACAAAGGAAATGCAGGCAGATGATGAACTGCTTCATCCATTAGGTCCAGATGATAAAAATATTGA
AACAAAAGAGGGATCTGAATTCTCATTTTCAGATGGAGAAGTGGCAGAAAAAGCAGAGGTTTACGGGTCA
GAAAATGAAAGTGAACGGAACTGTCTAGAAGAATCAGAGGGCTGCTATTGCAGATCATCTGGAGACCCTG
AACAAATAAAGGAAGACAGTTTATCAGAAGAGAGTGCTGATGCACGGAGTTTTGAAATGACTGAATTCAA
TCAAGCTTTAGAAGAAATAAAAGGGCAGGTTGTTGAAAACAACTCTGTAACTGAATTTTCTGAGGAGAAA
AACAGAACTGAAAATTACAACAGGCAAGATGGTCAGAGAGTTCAAGGAGGAGTCCCTGCTGGCTCTGACG
AGTATGAAGATGAATGCCCTCATCTAATTGCCTTGTCGTCATTAAATAGAGAATTCAGGCCTTTCAGAGA
TGAAGAAAATGTGGGAGCTATGAATCAGTATAGAACAAGAACTCTGAGTATCACTTCTTCAGGCAGTGCT
GTAAGCTGTTCAACAATTCCTCCAGAACTGGTGAAACAGAAGGTGAAACGTCAGTTGACAAAACAGCAAA
AATCAGCTGTCAGACGTCGATTGCAGAAAGGAGAAGCAAATATATTTACCAAGCAACGTAGGGAAAACAT
GCAAAATATCAAATCAAGTTTGGAAGCAGCCAGCTTTTGGGGAGAATAA

Translation (552 aa):
MGKVNVAKLRYMSRDDFRVLTAVEMGMKNHEIVPGSLIASIASLKHGGCNKVLRELVKHKLIAWERTKTV
QGYRLTNAGYDYLALKTLSSRQVVESVGNQMGVGKESDIYIVANEEGQQFALKLHRLGRTSFRNLKNKRD
YHKHRHNVSWLYLSRLSAMKEFAYMKALYERKFPVPKPIDYNRHAVVMELINGYPLCQIHHVEDPASVYD
EAMELIVKLANHGLIHGDFNEFNLILDESDHITMIDFPQMVSTSHPNAEWYFDRDVKCIKDFFMKRFSYE
SELFPTFKDIRREDTLDVEVSASGYTKEMQADDELLHPLGPDDKNIETKEGSEFSFSDGEVAEKAEVYGS
ENESERNCLEESEGCYCRSSGDPEQIKEDSLSEESADARSFEMTEFNQALEEIKGQVVENNSVTEFSEEK
NRTENYNRQDGQRVQGGVPAGSDEYEDECPHLIALSSLNREFRPFRDEENVGAMNQYRTRTLSITSSGSA
VSCSTIPPELVKQKVKRQLTKQQKSAVRRRLQKGEANIFTKQRRENMQNIKSSLEAASFWGE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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