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Report for CCDS41.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41.1 Public Homo sapiens 1 PEX10 24 110 108 CCDS HistoryNCBI Gene:5192Re-query CCDS DB by CCDS ID:41.1Re-query CCDS DB by GeneID:5192See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288774.8 ENSP00000288774.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288774.8Link to Ensembl Protein Viewer:ENSP00000288774.3Re-query CCDS DB by Nucleotide ID:ENST00000288774Re-query CCDS DB by Protein ID:ENSP00000288774
Original member Current member NCBI NM_153818.2 NP_722540.1 Accepted alive Link to Nucleotide Sequence:NM_153818.2Link to Protein Sequence:NP_722540.1Re-query CCDS DB by Nucleotide ID:NM_153818Re-query CCDS DB by Protein ID:NP_722540Link to BLAST:NP_722540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722540.1 346 O60683-2 346 100% 0 0

Chromosomal Locations for CCDS 41.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 2405766 2405834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2406484 2406619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2406720 2406955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2408452 2408858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2410371 2410451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 2412391 2412502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCCCCGGCCGCCGCCAGCCCCCCGGAGGTGATCCGCGCGGCGCAGAAGGACGAGTACTACCGCGGTG
GGCTGCGGAGCGCGGCGGGCGGCGCCCTGCACAGCCTGGCGGGTGCGAGGAAGTGGCTGGAGTGGAGGAA
GGAGGTTGAGCTGCTCTCAGATGTGGCCTACTTTGGCCTCACCACACTTGCAGGCTACCAGACCCTGGGG
GAGGAGTACGTCAGCATCATCCAGGTGGACCCATCGCGGATACATGTGCCCTCCTCGCTGCGCCGTGGCG
TGCTGGTGACACTGCATGCCGTCCTGCCCTACCTGCTGGACAAGGCCCTGCTCCCCCTGGAGCAGGAGCT
GCAGGCTGACCCCGACAGTGGGCGACCCTTGCAGGGGAGCCTGGGGCCAGGTGGGCGTGGCTGCTCAGGG
GCGCGGCGCTGGATGCGTCACCACACGGCCACCCTGACTGAGCAGCAGAGGAGGGCGCTGCTGCGGGCGG
TCTTCGTCCTCAGACAGGGCCTCGCCTGCCTCCAGCGGCTACATGTTGCCTGGTTTTACATCCACGGTGT
CTTCTACCACCTGGCCAAGAGGCTCACGGGGATCACGTACCAGGCGCTGAGGCCAGATCCCCTCAGGGTC
CTGATGAGTGTGGCGCCATCTGCCTTACAGCTCCGTGTCCGCAGCCTGCCCGGAGAGGACCTGAGGGCCC
GTGTTAGCTACAGGCTGCTGGGGGTCATCTCACTGCTGCACCTGGTGCTGTCCATGGGGCTGCAGCTGTA
CGGTTTCAGGCAGCGGCAGCGAGCCAGGAAGGAGTGGAGGCTGCACCGCGGCCTGTCTCACCGCAGGGCC
TCCTTGGAGGAGAGAGCCGTTTCCAGAAACCCCCTGTGCACCCTGTGCCTGGAGGAGCGCAGGCACCCAA
CAGCCACGCCCTGCGGCCACCTGTTCTGCTGGGAGTGCATCACCGCGTGGTGCAGCAGCAAGGCGGAGTG
TCCCCTCTGCCGGGAGAAGTTCCCTCCCCAGAAGCTCATCTACCTTCGGCACTACCGCTGA

Translation (346 aa):
MAPAAASPPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVELLSDVAYFGLTTLAGYQTLG
EEYVSIIQVDPSRIHVPSSLRRGVLVTLHAVLPYLLDKALLPLEQELQADPDSGRPLQGSLGPGGRGCSG
ARRWMRHHTATLTEQQRRALLRAVFVLRQGLACLQRLHVAWFYIHGVFYHLAKRLTGITYQALRPDPLRV
LMSVAPSALQLRVRSLPGEDLRARVSYRLLGVISLLHLVLSMGLQLYGFRQRQRARKEWRLHRGLSHRRA
SLEERAVSRNPLCTLCLEERRHPTATPCGHLFCWECITAWCSSKAECPLCREKFPPQKLIYLRHYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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