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Report for CCDS41023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41023.1 Public Mus musculus X Ikbkg 23 108 98 CCDS HistoryNCBI Gene:16151Re-query CCDS DB by CCDS ID:41023.1Re-query CCDS DB by GeneID:16151See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41023.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114127.7 ENSMUSP00000109762.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114127.7Link to Ensembl Protein Viewer:ENSMUSP00000109762.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114127Re-query CCDS DB by Protein ID:ENSMUSP00000109762
Original member Current member EBI ENSMUST00000114128.7 ENSMUSP00000109763.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114128.7Link to Ensembl Protein Viewer:ENSMUSP00000109763.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114128Re-query CCDS DB by Protein ID:ENSMUSP00000109763
Original member Current member EBI ENSMUST00000114133.8 ENSMUSP00000109768.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114133.8Link to Ensembl Protein Viewer:ENSMUSP00000109768.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114133Re-query CCDS DB by Protein ID:ENSMUSP00000109768
Original member Current member EBI ENSMUST00000164101.7 ENSMUSP00000126770.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164101.7Link to Ensembl Protein Viewer:ENSMUSP00000126770.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164101Re-query CCDS DB by Protein ID:ENSMUSP00000126770
Original member Current member NCBI NM_001161423.1 NP_001154895.1 Accepted alive Link to Nucleotide Sequence:NM_001161423.1Link to Protein Sequence:NP_001154895.1Re-query CCDS DB by Nucleotide ID:NM_001161423Re-query CCDS DB by Protein ID:NP_001154895Link to BLAST:NP_001154895.1
Original member Current member NCBI NM_010547.2 NP_034677.2 Accepted alive Link to Nucleotide Sequence:NM_010547.2Link to Protein Sequence:NP_034677.2Re-query CCDS DB by Nucleotide ID:NM_010547Re-query CCDS DB by Protein ID:NP_034677Link to BLAST:NP_034677.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154895.1 412 O88522 412 100% 0 0
NP_034677.2 412 O88522 412 100% 0 0

Chromosomal Locations for CCDS 41023.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74432820 74433006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74433803 74434014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74437164 74437282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74438907 74439059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74439875 74439950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74443345 74443488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74443772 74443914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74447859 74447920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74448217 74448359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGAACAAGCACCCCTGGAAGAACCAGCTGAGTGAGATGGTGCAGCCCAGTGGTGGCCCAGCAGAGGACC
AGGACATGCTGGGTGAAGAATCTTCTCTGGGGAAGCCTGCAATGCTACATCTGCCTTCAGAGCAGGGTAC
TCCTGAGACCCTCCAGCGCTGCCTGGAAGAGAATCAAGAGCTCCGAGACGCTATCCGGCAGAGCAATCAG
ATGCTGAGGGAACGCTGTGAGGAGCTGCTGCATTTCCAGGTCAGCCAGCGGGAGGAGAAGGAGTTCCTTA
TGTGCAAATTCCAGGAAGCCCGGAAGCTGGTGGAGAGACTGAGCTTGGAGAAGCTTGATCTTCGGAGTCA
GAGGGAACAGGCCTTAAAGGAGTTGGAGCAACTGAAGAAATGCCAACAGCAGATGGCTGAGGACAAGGCC
TCTGTGAAAGCTCAGGTGACATCATTGCTCGGAGAACTCCAGGAGAGCCAGAGCCGTTTGGAGGCTGCCA
CCAAGGATCGGCAAGCTTTAGAGGGAAGGATTCGAGCAGTTAGTGAGCAGGTCAGACAGCTGGAGAGTGA
GCGGGAGGTGCTACAGCAGCAGCACAGCGTCCAGGTGGACCAGCTGCGTATGCAGAACCAGAGCGTGGAG
GCTGCCTTGCGAATGGAGCGGCAGGCTGCTTCAGAGGAGAAGCGGAAGCTGGCTCAGTTGCAGGCAGCCT
ATCACCAGCTCTTCCAAGACTACGACAGCCACATTAAGAGCAGCAAGGGCATGCAGCTGGAAGATCTGAG
GCAACAGCTCCAGCAAGCTGAGGAGGCCCTGGTAGCCAAACAGGAATTGATTGATAAGCTGAAAGAGGAG
GCTGAGCAGCACAAGATTGTGATGGAGACTGTGCCAGTCTTGAAGGCCCAGGCGGATATCTACAAGGCTG
ACTTCCAAGCTGAGAGGCATGCCCGGGAGAAGCTGGTGGAGAAGAAGGAGTATTTGCAGGAGCAGCTGGA
GCAGCTGCAGCGCGAGTTCAACAAGCTGAAAGTTGGCTGCCATGAGTCAGCCAGGATTGAGGATATGAGG
AAGCGGCATGTAGAGACTCCCCAGCCTCCTTTACTCCCTGCTCCAGCTCACCACTCCTTTCATTTGGCCT
TGTCCAACCAGCGGAGGAGCCCTCCTGAAGAACCTCCTGACTTCTGTTGTCCGAAGTGCCAGTATCAGGC
TCCTGATATGGACACTCTACAGATACATGTCATGGAGTGCATAGAGTAG

Translation (412 aa):
MNKHPWKNQLSEMVQPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTPETLQRCLEENQELRDAIRQSNQ
MLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDLRSQREQALKELEQLKKCQQQMAEDKA
SVKAQVTSLLGELQESQSRLEAATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVE
AALRMERQAASEEKRKLAQLQAAYHQLFQDYDSHIKSSKGMQLEDLRQQLQQAEEALVAKQELIDKLKEE
AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHESARIEDMR
KRHVETPQPPLLPAPAHHSFHLALSNQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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