NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41031.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41031.1 Public Mus musculus X Brcc3 23 108 98 CCDS HistoryNCBI Gene:210766Re-query CCDS DB by CCDS ID:41031.1Re-query CCDS DB by GeneID:210766See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41031.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033544.13 ENSMUSP00000033544.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033544.13Link to Ensembl Protein Viewer:ENSMUSP00000033544.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033544Re-query CCDS DB by Protein ID:ENSMUSP00000033544
Original member Current member EBI ENSMUST00000114074.7 ENSMUSP00000109708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114074.7Link to Ensembl Protein Viewer:ENSMUSP00000109708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114074Re-query CCDS DB by Protein ID:ENSMUSP00000109708
Original member Current member NCBI NM_001166457.1 NP_001159929.1 Accepted alive Link to Nucleotide Sequence:NM_001166457.1Link to Protein Sequence:NP_001159929.1Re-query CCDS DB by Nucleotide ID:NM_001166457Re-query CCDS DB by Protein ID:NP_001159929Link to BLAST:NP_001159929.1
Original member Current member NCBI NM_001166459.1 NP_001159931.1 Accepted alive Link to Nucleotide Sequence:NM_001166459.1Link to Protein Sequence:NP_001159931.1Re-query CCDS DB by Nucleotide ID:NM_001166459Re-query CCDS DB by Protein ID:NP_001159931Link to BLAST:NP_001159931.1
Original member Current member NCBI NM_001358736.1 NP_001345665.1 Accepted alive Link to Nucleotide Sequence:NM_001358736.1Link to Protein Sequence:NP_001345665.1Re-query CCDS DB by Nucleotide ID:NM_001358736Re-query CCDS DB by Protein ID:NP_001345665Link to BLAST:NP_001345665.1
Original member Current member NCBI NM_001358737.1 NP_001345666.1 Accepted alive Link to Nucleotide Sequence:NM_001358737.1Link to Protein Sequence:NP_001345666.1Re-query CCDS DB by Nucleotide ID:NM_001358737Re-query CCDS DB by Protein ID:NP_001345666Link to BLAST:NP_001345666.1
Original member Current member NCBI NM_145956.4 NP_666068.1 Accepted alive Link to Nucleotide Sequence:NM_145956.4Link to Protein Sequence:NP_666068.1Re-query CCDS DB by Nucleotide ID:NM_145956Re-query CCDS DB by Protein ID:NP_666068Link to BLAST:NP_666068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159929.1 291 P46737-1 291 100% 0 0
NP_001159931.1 291 P46737-1 291 100% 0 0
NP_001345665.1 291 P46737-1 291 100% 0 0
NP_001345666.1 291 P46737-1 291 100% 0 0
NP_666068.1 291 P46737-1 291 100% 0 0

Chromosomal Locations for CCDS 41031.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 75416719 75416841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75417577 75417593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75418411 75418465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75422779 75422898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75435465 75435552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75436106 75436194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75437936 75437991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75447156 75447287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75447803 75447846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 75449969 75450120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGCGGTGCAGGTGGTGCAAGCTGTGCAGGCGGTTCATCTTGAGTCTGACGCTTTCCTAGTTTGTCTCA
ACCATGCTCTGAGCACAGAAAAGGAGGAAGTGATGGGTCTGTGTATAGGGGAGTTGAATGATGACATAAG
GAGTGACTCCAAATTTACATACACTGGAACGGAAATGCGCACAGTCCAAGAAAAGATGGATACCATCAGA
ATTGTTCATATCCATTCTGTCATCATCTTGCGGCGTTCTGACAAGAGAAAGGACCGTGTAGAAATTTCTC
CAGAGCAGCTGTCTGCAGCTTCAACAGAGGCAGAAAGGTTGGCTGAACTAACAGGTCGTCCCATGAGAGT
TGTTGGCTGGTATCATTCCCACCCTCATATAACTGTTTGGCCTTCACATGTTGATGTTCGTACACAAGCC
ATGTACCAAATGATGGATCAAGGCTTTGTAGGACTTATTTTTTCCTGTTTCATAGAAGACAAAAACACAA
AGACTGGCCGGGTACTCTATACTTGCTTCCAATCCATACAAGCCCAAAAAAGCTCAGAGTATGAGAGAAT
TGAAATCCCAATCCATATTGTACCTCATATCACTATTGGGAAAGTATGCCTTGAATCTGCAGTAGAGCTG
CCAAAAATCCTGTGTCAGGAAGAACAGGATGCATATAGAAGGATTCACAGCCTTACACATCTGGACTCAG
TGACCAAGATCCATAATGGCTCAGTATTTACCAAGAATTTGTGCAGTCAGATGTCAGCAGTCAGTGGGCC
TCTACTGCAGTGGTTGGAAGACAGATTGGAGCAAAACCAGCAGCATTTGCAGGAGTTGCAACAAGAAAAG
GAAGAGCTTATGGAAGAGCTGTCTTCCCTAGAATAA

Translation (291 aa):
MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDIRSDSKFTYTGTEMRTVQEKMDTIR
IVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGWYHSHPHITVWPSHVDVRTQA
MYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQKSSEYERIEIPIHIVPHITIGKVCLESAVEL
PKILCQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQELQQEK
EELMEELSSLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH