NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS41117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41117.1 Public Mus musculus X Pcdh19 23 108 98 CCDS HistoryNCBI Gene:279653Re-query CCDS DB by CCDS ID:41117.1Re-query CCDS DB by GeneID:279653See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000149154.7 ENSMUSP00000116886.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000149154.7Link to Ensembl Protein Viewer:ENSMUSP00000116886.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000149154Re-query CCDS DB by Protein ID:ENSMUSP00000116886
Original member Current member NCBI NM_001105245.1 NP_001098715.1 Accepted alive Link to Nucleotide Sequence:NM_001105245.1Link to Protein Sequence:NP_001098715.1Re-query CCDS DB by Nucleotide ID:NM_001105245Re-query CCDS DB by Protein ID:NP_001098715Link to BLAST:NP_001098715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098715.1 1145 Q80TF3 1145 100% 0 0

Chromosomal Locations for CCDS 41117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 133587988 133588577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133625269 133625441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133632895 133632953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133681081 133681408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133682092 133682232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 133685118 133687264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3438 nt):
ATGGAGTCTCTCCTGCTGCCGGTGCTATTGCTGCTGGCTGTACTGTGGACGCAGGCGGCTGCCCTGATTA
ACCTTAAATACTCGGTCGAAGAGGAGCAGCGCGCCGGGACGGTGATCGCTAACGTGGCCAAGGACGCGCG
GGAGGCCGGCTTCGCGCTGGACCCCCGACAGGCTTCTGCTTTCCGCGTGGTGTCCAACTCGGCTCCGCAC
CTGGTGGACATCAACCCCAGCTCGGGCCTCTTGGTCACCAAGCAGAAGATTGACCGAGACCTGCTGTGCC
GCCAGAGCCCCAAGTGTATCATCTCGCTCGAGGTCATGTCCAGCTCAATGGAGATCTGTGTGATTAAGGT
GGAGATCAAAGACCTGAACGACAATGCTCCCAGTTTTCCGGCCGCACAGATAGAGCTGGAGATCTCTGAG
GCAGCCAGCCCCGGCACCCGCATCCCACTGGACAGTGCATATGACCCGGACTCCGGCAGCTTTGGTGTGC
AGACCTACGAGCTCACGCCCAACGAGCTGTTTGGCCTGGAAATAAAGACGCGGGGTGACGGTTCGCGCTT
TGCTGAACTGGTGGTGGAGAAGAGCCTGGACCGTGAGACACAGTCACATTACAGCTTTCGCATTACGGCT
CTCGACGGAGGCGACCCACCACACATGGGCACAGTTGGCCTCAGCATCAAGGTGACCGATTCGAATGACA
ACAACCCAGTGTTTGGCGAGTCCACCTACTCAGTGAGCGTGCCTGAAAATTCACCTCCCAATACACCCGT
CATCCGCCTCAATGCCAGCGATCCAGATGAGGGCACCAATGGCCAAGTGGTCTATTCCTTCTATGGTTAT
GTCAATGACCGTACGCGTGAACTCTTCCAAATTGACCCACACAGCGGCCTGGTCACCGTCACCGGTGCGC
TAGACTATGAAGAGGGCCATGTGTACGAACTGGATGTGCAAGCCAAAGACCTGGGGCCCAACTCTATCCC
TGCACACTGCAAAGTCACAGTCAGCGTACTTGATACTAATGACAACCCGCCAATTATCAACCTCCTGTCG
GTCAATAGCGAGCTTGTGGAGGTGAGCGAGAGCGCCCCCCCGGGCTATGTGATTGCCCTGGTTCGGGTGT
CTGATCGCGACTCCGGGCTCAATGGACGTGTGCAGTGCCGCTTGCTGGGCAATGTCCCCTTTCGACTGCA
GGAGTATGAGAGCTTCTCCACTATTCTTGTGGATGGGAGGCTGGACCGAGAGCAGCATGACCAGTACAAT
CTCACTATTCAGGCTCGAGACAGCGGTGTGCCTATGCTGCAGAGTGCCAAGTCGTTCACTGTGCGTATCA
CAGATGAGAATGACAACCACCCACACTTCTCCAAGCCTTACTACCAAGTCATTGTACAGGAGAACAACAC
TCCTGGTGCCTATCTGCTCTCAGTGTCTGCCCGCGACCCTGACATGGGTCTTAATGGCAGTGTCTCCTAT
CAAATTGTGCCATCACAGGTGCGAGACATGCCAGTCTTCACCTATGTCTCAATCAATCCCAACTCTGGTG
ACATCTATGCGCTCCGTTCCTTTAACCATGAGCAGACCAAGGCGTTTGAATTCAAGGTCCTGGCCAAGGA
TGGCGGCTTGCCCTCCCTGCAAAGCAATGCCACTGTGAGGGTCATTATCCTCGACGTCAATGACAATACA
CCGGTCATCACTGCCCCACCTCTGATCAATGGCACTGCTGAGGTCTACATTCCTCGAAACTCTGGCATAG
GCTATTTGGTGACTGTAGTTAAGGCAGACGATTATGATGAGGGCGAAAATGGCCGAGTCACCTATGACAT
GACAGAAGGTGACCGAGGTTTCTTCGAAATAGACCAGGTCAATGGAGAAGTCAGAACCACTCGTACCTTT
AATGAGAACTCCAAGCCTTCCTATGAGCTTATAGTGGTGGCCCATGACCATGGCAAGACATCTCTCTCTG
CTTCTGCCCTTGTCCTAATATACCTGTCCCCAGCTCTTGATGCCCAAGAGTCAATGGGCTCTGTGAACTT
ATCCCTGATTTTCATTATTGCTCTGGGCTCCATTGCGGGCATTCTCTTTGTCACTATGATCTTCGTGGCA
ATCAAATGCAAGCGTGACAACAAAGAGATCCGGACCTACAATTGCAGTAATTGTTTAACCATCACTTGTC
TCCTCGGCTGTTTTATAAAAGGACAAAACAGCAAGTGTCTGCATTGCATCTCGGTTTCTCCCAATAGTGA
GGAGCAAGACAAAAAGGCAGAGGAGAAAGTGAGCCTAAGGGGAAAGAGAATCGCTGAGTACTCCTATGGG
CATCAAAAGAAATCAAGTAAGAAGAAAAAAATTAGTAAGAATGACATCCGCCTTGTACCTCGGGACGTGG
AGGAGACAGACAAGATGAATGTTGTCAGTTGCTCCTCCCTTACTTCGTCCCTCAACTATTTCGACTACCA
CCAGCAGACACTGCCCCTGGGCTGTCGTCGCTCTGAGAGCACTTTCCTGAATGTGGAGAACCAGAATACC
CGTAACACCACTGCCAGCCACATCTACCATCACTCCTTCAACAGCCAGGGCCCACAGCAGCCAGACCTGA
TCATCAATGGTGTGCCCCTGCCTGAGACTGAAAACTATTCTTTTGACTCTAACTACGTGAATAGCCGTGC
CCATTTAATCAAAAGCAGCTCCACCTTCAAGGACCTAGAGGGCAACAGCCTGAAGGATAGTGGGCATGAG
GAGAGTGACCAGACTGACAGTGAGCATGATGTCCAGAGGAGCCTGTACTGCGATACTGCTGTGAATGATG
TCCTGAACACCAGTGTGACTTCCATGGGATCTCAGATGCCTGACCATGACCAGAATGAAGGATTTCATTG
CAGGGAAGAATGCCGGATTCTTGGCCACTCTGATAGATGCTGGATGCCTCGGAATCCCATGCCCACCCGC
TCCAAGTCACCTGAGCACGTGAGGAACATCATCGCTCTGTCCATTGAAGCTACTGCTGCTGATGTTGAGG
CTTATGACGACTGCGGCCCCACCAAGCGGACTTTCGCGACCTTTGGAAAAGATGTCAGTAGCCACCGGGC
TGAGGAGCGTCCCATCCTGAAAGGCAAGCGGACTGTCGATGTGACCATCTGCAGCCCCAAAGTCAACAGC
GCTATCCGGGAGGCAGGCAATGGGTGTGAAGCTATTAGCCCTGTCACCTCCCCACTCCACCTGAAGAGCC
CTCTGCCCACCAAGCCTTCTATATCTTACACCGTCGCCCTGGCTCCTCCAGCTCACGATCTGGAGCACCA
TGCCAACAGTGGCGCCTCTCGTCCTTCTGAGGCTGAGCCCCGTGGAGCCGACAACGAGAAAGTGATGCAT
GAGGTCAACCCTATTCGGAAGGATGGTCGTGACAAGGAATCTCCTAGCGTGAAGCGTCTGAAGGATATCG
TTCTCTAA

Translation (1145 aa):
MESLLLPVLLLLAVLWTQAAALINLKYSVEEEQRAGTVIANVAKDAREAGFALDPRQASAFRVVSNSAPH
LVDINPSSGLLVTKQKIDRDLLCRQSPKCIISLEVMSSSMEICVIKVEIKDLNDNAPSFPAAQIELEISE
AASPGTRIPLDSAYDPDSGSFGVQTYELTPNELFGLEIKTRGDGSRFAELVVEKSLDRETQSHYSFRITA
LDGGDPPHMGTVGLSIKVTDSNDNNPVFGESTYSVSVPENSPPNTPVIRLNASDPDEGTNGQVVYSFYGY
VNDRTRELFQIDPHSGLVTVTGALDYEEGHVYELDVQAKDLGPNSIPAHCKVTVSVLDTNDNPPIINLLS
VNSELVEVSESAPPGYVIALVRVSDRDSGLNGRVQCRLLGNVPFRLQEYESFSTILVDGRLDREQHDQYN
LTIQARDSGVPMLQSAKSFTVRITDENDNHPHFSKPYYQVIVQENNTPGAYLLSVSARDPDMGLNGSVSY
QIVPSQVRDMPVFTYVSINPNSGDIYALRSFNHEQTKAFEFKVLAKDGGLPSLQSNATVRVIILDVNDNT
PVITAPPLINGTAEVYIPRNSGIGYLVTVVKADDYDEGENGRVTYDMTEGDRGFFEIDQVNGEVRTTRTF
NENSKPSYELIVVAHDHGKTSLSASALVLIYLSPALDAQESMGSVNLSLIFIIALGSIAGILFVTMIFVA
IKCKRDNKEIRTYNCSNCLTITCLLGCFIKGQNSKCLHCISVSPNSEEQDKKAEEKVSLRGKRIAEYSYG
HQKKSSKKKKISKNDIRLVPRDVEETDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNT
RNTTASHIYHHSFNSQGPQQPDLIINGVPLPETENYSFDSNYVNSRAHLIKSSSTFKDLEGNSLKDSGHE
ESDQTDSEHDVQRSLYCDTAVNDVLNTSVTSMGSQMPDHDQNEGFHCREECRILGHSDRCWMPRNPMPTR
SKSPEHVRNIIALSIEATAADVEAYDDCGPTKRTFATFGKDVSSHRAEERPILKGKRTVDVTICSPKVNS
AIREAGNGCEAISPVTSPLHLKSPLPTKPSISYTVALAPPAHDLEHHANSGASRPSEAEPRGADNEKVMH
EVNPIRKDGRDKESPSVKRLKDIVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH