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Report for CCDS4124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4124.1 Public Homo sapiens 5 LVRN 24 110 108 CCDS HistoryNCBI Gene:206338Re-query CCDS DB by CCDS ID:4124.1Re-query CCDS DB by GeneID:206338See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357872.9 ENSP00000350541.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357872.9Link to Ensembl Protein Viewer:ENSP00000350541.4Re-query CCDS DB by Nucleotide ID:ENST00000357872Re-query CCDS DB by Protein ID:ENSP00000350541
Original member Current member NCBI NM_173800.5 NP_776161.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173800.5Link to Protein Sequence:NP_776161.3Re-query CCDS DB by Nucleotide ID:NM_173800Re-query CCDS DB by Protein ID:NP_776161Link to BLAST:NP_776161.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776161.3 990 Q6Q4G3-1 990 100% 0 0

Chromosomal Locations for CCDS 4124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115962618 115963312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115983287 115983429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115984570 115984709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115987813 115987939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115992123 115992277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115993741 115993854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115999762 115999902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116000433 116000498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116000593 116000658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116001067 116001239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116002835 116002911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116003241 116003380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116005912 116005967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116010741 116010894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116012374 116012468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116014420 116014527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116015252 116015419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116015628 116015765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116022391 116022466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 116025978 116026118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2973 nt):
ATGGGGCCCCCTTCCAGCTCAGGCTTCTATGTGAGCCGCGCAGTGGCCCTGCTGCTGGCTGGGCTGGTAG
CCGCCCTCCTGCTGGCGCTGGCCGTACTCGCCGCCTTGTACGGCCACTGCGAGCGCGTCCCACCGTCGGA
GCTGCCTGGACTCAGGGACTTGGAAGCCGAGTCTTCCCCTCCCCTCAGGCAGAAGCCGACGCCAACCCCG
AAACCCAGCAGTGCACGCGAGCTAGCGGTGACGACCACCCCGAGCAACTGGCGACCCCCGGGGCCCTGGG
ACCAGCTACGCCTGCCGCCCTGGCTCGTGCCGCTGCACTACGATCTGGAGCTGTGGCCGCAGCTGAGGCC
CGACGAGCTTCCGGCCGGGTCTTTGCCCTTCACTGGCCGCGTGAACATCACGGTGCGCTGCACGGTGGCC
ACCTCTCGACTGCTGCTGCATAGCCTCTTCCAGGACTGCGAGCGCGCCGAGGTGCGGGGACCCCTTTCCC
CGGGCACTGGGAACGCCACAGTGGGCCGCGTGCCCGTGGACGACGTGTGGTTCGCGCTGGACACGGAATA
CATGGTGCTGGAGCTCAGTGAGCCCCTGAAACCTGGTAGCAGCTACGAGCTGCAGCTTAGCTTCTCGGGC
CTGGTGAAGGAAGACCTCAGGGAGGGACTCTTCCTCAACGTCTACACCGACCAGGGCGAGCGCAGGGCCC
TGTTAGCGTCCCAGCTGGAACCAACATTTGCCAGGTATGTTTTCCCTTGTTTTGATGAGCCAGCTCTGAA
GGCAACTTTTAATATTACAATGATTCATCATCCAAGTTATGTGGCCCTTTCCAACATGCCAAAGCTAGGT
CAGTCTGAAAAAGAAGATGTGAATGGAAGCAAATGGACTGTTACAACCTTTTCCACTACGCCCCACATGC
CAACTTACTTAGTCGCATTTGTTATATGTGACTATGACCACGTCAACAGAACAGAAAGGGGCAAGGAGAT
ACGCATCTGGGCCCGGAAAGATGCAATTGCAAATGGAAGTGCAGACTTTGCTTTGAACATCACAGGTCCC
ATCTTCTCTTTTCTGGAGGATTTGTTTAATATCAGTTACTCTCTTCCAAAAACAGATATAATTGCCTTGC
CTAGTTTTGACAACCATGCAATGGAAAACTGGGGACTAATGATATTTGATGAATCAGGATTGTTGTTGGA
ACCAAAAGATCAACTGACAGAAAAAAAGACTCTGATCTCCTATGTTGTCTCCCACGAGATTGGACACCAG
TGGTTTGGAAACTTGGTTACCATGAATTGGTGGAACAATATCTGGCTCAACGAGGGTTTTGCATCTTATT
TTGAGTTTGAAGTAATTAACTACTTTAATCCTAAACTCCCAAGAAATGAGATCTTTTTTTCTAACATTTT
ACATAATATCCTCAGAGAAGATCACGCCCTGGTGACTAGAGCTGTGGCCATGAAGGTGGAAAATTTCAAA
ACAAGTGAAATACAGGAACTCTTTGACATATTTACTTACAGCAAGGGAGCGTCTATGGCCCGGATGCTTT
CTTGTTTCTTGAATGAGCATTTATTTGTCAGTGCACTCAAGTCATATTTGAAGACATTTTCCTACTCAAA
CGCTGAGCAAGATGATCTATGGAGGCATTTTCAAATGGCCATAGATGACCAGAGTACAGTTATTTTGCCA
GCAACAATAAAAAACATAATGGACAGTTGGACACACCAGAGTGGTTTTCCAGTGATCACTTTAAATGTGT
CTACTGGCGTCATGAAACAGGAGCCATTTTATCTTGAAAACATTAAAAATCGGACTCTTCTAACCAGCAA
TGACACATGGATTGTCCCTATTCTTTGGATAAAAAATGGAACTACACAACCTTTAGTCTGGCTAGATCAA
AGCAGCAAAGTATTCCCAGAAATGCAAGTTTCAGATTCTGACCATGACTGGGTGATTTTGAATTTGAATA
TGACTGGATATTATAGAGTTAATTATGATAAATTAGGTTGGAAGAAACTAAATCAACAACTTGAAAAGGA
TCCTAAGGCGATTCCTGTTATTCACAGACTGCAGTTGATTGATGATGCCTTTTCCTTGTCTAAAAACAAT
TATATTGAGATTGAAACAGCACTTGAGTTAACCAAGTACCTTGCTGAAGAAGATGAAATTATAGTATGGC
ATACAGTCTTGGTAAACTTGGTAACCAGGGATCTTGTTTCTGAGGTGAACATCTATGATATATACTCATT
ATTAAAGAGGTACCTATTAAAGAGACTTAATTTAATATGGAATATTTATTCAACTATAATTCGTGAAAAT
GTGTTGGCATTACAAGATGACTACTTAGCTCTAATATCACTGGAAAAACTTTTTGTAACTGCGTGTTGGT
TGGGCCTTGAAGACTGCCTTCAGCTGTCAAAAGAACTTTTCGCAAAATGGGTGGATCATCCAGAAAATGA
AATACCTTATCCAATTAAAGATGTGGTTTTATGTTATGGCATTGCCTTGGGAAGTGATAAAGAGTGGGAC
ATCTTGTTAAATACTTACACTAATACAACAAACAAAGAAGAAAAGATTCAACTTGCTTATGCAATGAGCT
GCAGCAAAGACCCATGGATACTTAACAGATATATGGAGTATGCCATCAGCACATCTCCATTCACTTCTAA
TGAAACAAATATAATTGAGGTTGTGGCTTCATCTGAAGTTGGCCGGTATGTCGCAAAAGACTTCTTAGTC
AACAACTGGCAAGCTGTGAGTAAAAGGTATGGAACACAATCATTGATTAATCTAATATATACAATAGGGA
GAACCGTAACTACAGATTTACAGATTGTGGAGCTGCAGCAGTTTTTCAGTAACATGTTGGAGGAACACCA
GAGGATCAGAGTTCATGCCAACTTACAGACAATAAAGAATGAAAATCTGAAAAACAAGAAGCTAAGTGCC
AGGATAGCTGCGTGGCTAAGGAGAAACACATAG

Translation (990 aa):
MGPPSSSGFYVSRAVALLLAGLVAALLLALAVLAALYGHCERVPPSELPGLRDLEAESSPPLRQKPTPTP
KPSSARELAVTTTPSNWRPPGPWDQLRLPPWLVPLHYDLELWPQLRPDELPAGSLPFTGRVNITVRCTVA
TSRLLLHSLFQDCERAEVRGPLSPGTGNATVGRVPVDDVWFALDTEYMVLELSEPLKPGSSYELQLSFSG
LVKEDLREGLFLNVYTDQGERRALLASQLEPTFARYVFPCFDEPALKATFNITMIHHPSYVALSNMPKLG
QSEKEDVNGSKWTVTTFSTTPHMPTYLVAFVICDYDHVNRTERGKEIRIWARKDAIANGSADFALNITGP
IFSFLEDLFNISYSLPKTDIIALPSFDNHAMENWGLMIFDESGLLLEPKDQLTEKKTLISYVVSHEIGHQ
WFGNLVTMNWWNNIWLNEGFASYFEFEVINYFNPKLPRNEIFFSNILHNILREDHALVTRAVAMKVENFK
TSEIQELFDIFTYSKGASMARMLSCFLNEHLFVSALKSYLKTFSYSNAEQDDLWRHFQMAIDDQSTVILP
ATIKNIMDSWTHQSGFPVITLNVSTGVMKQEPFYLENIKNRTLLTSNDTWIVPILWIKNGTTQPLVWLDQ
SSKVFPEMQVSDSDHDWVILNLNMTGYYRVNYDKLGWKKLNQQLEKDPKAIPVIHRLQLIDDAFSLSKNN
YIEIETALELTKYLAEEDEIIVWHTVLVNLVTRDLVSEVNIYDIYSLLKRYLLKRLNLIWNIYSTIIREN
VLALQDDYLALISLEKLFVTACWLGLEDCLQLSKELFAKWVDHPENEIPYPIKDVVLCYGIALGSDKEWD
ILLNTYTNTTNKEEKIQLAYAMSCSKDPWILNRYMEYAISTSPFTSNETNIIEVVASSEVGRYVAKDFLV
NNWQAVSKRYGTQSLINLIYTIGRTVTTDLQIVELQQFFSNMLEEHQRIRVHANLQTIKNENLKNKKLSA
RIAAWLRRNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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