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Report for CCDS41254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41254.1 Public Homo sapiens 1 PRAMEF12 24 110 108 CCDS HistoryNCBI Gene:390999Re-query CCDS DB by CCDS ID:41254.1Re-query CCDS DB by GeneID:390999See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357726.5 ENSP00000350358.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357726.5Link to Ensembl Protein Viewer:ENSP00000350358.4Re-query CCDS DB by Nucleotide ID:ENST00000357726Re-query CCDS DB by Protein ID:ENSP00000350358
Original member Current member NCBI NM_001080830.5 NP_001074299.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080830.5Link to Protein Sequence:NP_001074299.2Re-query CCDS DB by Nucleotide ID:NM_001080830Re-query CCDS DB by Protein ID:NP_001074299Link to BLAST:NP_001074299.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074299.2 483 O95522 483 100% 0 0

Chromosomal Locations for CCDS 41254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12774868 12775154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12775543 12776118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12777011 12777599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGAGCCTCCAGGCCCCACCTAGACTCCTGGAGCTGGCTGAGCAGAGTCTGCTGAGAGACCGGGCCTTGG
CCATCCCCACCCTGGAGGAGCTGCCCAGGGAGCTCTTTCCCCCACTGTTCATGGAGGCCTTTACCAGGAG
ATGCTGCGAGACCCTGACAACTATGGTGCAGGCCTGGCCCTTCACCTGCCTTCCTCTAGGGTCCCTGATG
AAGTCATGTAATCTAGAGATCTTTCGAGCTGTGCTGGAGGGGCTTGATGCACTGCTTGCCCAGAAGGTTC
GCCCCAGGCGGTGGAAACTTCAAGTGTTGGACTTGCGGAATGTGGATGAGAACTTCTGGGGCATATGGTC
TGGAGCTTCTGCACTCTCCCCAGAGGCCCTGAGTAAGAGACGAACAGCAGGGAACTGTCCAAGGCCGGGT
GGGCAGCAGCCCTTGATGGTGATCCTAGACCTTTGCTTCAAGAATGGGACGCTGGATGAATGCCTCACCC
ACTTCTTAGAGTGGGGCAAGCAGAGAAAAGGCTTACTGCACGTGTGTTGCAAGGAGCTGCAGATTTTTGG
AATAGCCATCCACAGGATCATAGAGGTCCTGAACACGGTGGAGCTAGACTGTATCCAGGAGGTGGAAGTG
TGCTGCCCGTGGGAGCTGTCCATTCTTATAAGGTTCGCCCCTTACCTGGGCCAGATGAGGAATCTCCGCA
AACTTGTTCTCTTCAACATCCATGTCTCTGCCTGCATTCCCCTAGACAGGAAGGAGCAGTTTGTCATCCA
GTTCACCTCTCAGTTCCTCAAGCTGGACTACTTCCAGAAGCTTTACATGCACTCTGTCTCTTTCCTCGAA
GGCCACCTGGACCAGCTGCTCAGGTGTCTCCAGGCCCCCTTGGAGACAGTCGTAATGACCGAATGCCTGC
TGTCAGAGTCGGACCTGAAGCATCTCTCTTGGTGCCCGAGCATCCGTCAGCTAAAAGAGCTAGACCTGAG
GGGCATCACACTGACCCATTTCAGTCCTGAGCCCCTCTCAGTTCTGCTGGAGCAAGCTGAGGCCACCCTG
CAGACCCTGGACTTAGAGGACTGTGGGATCGTGGATTCCCAACTCAGCGCCATCCTGCCTGCCCTGAGCC
GCTGCTCCCAGCTCAGCACCTTCAGCTTCTGTGGGAACCTCATCTCCATGGCCGCCCTGGAGAACCTGCT
GCGCCACACCGTCGGGCTGAGCAAGCTAAGCCTGGAGCTGTATCCTGCCCCTCTGGAGAGTTATGATGCC
CAGGGTGCTCTCTGCTGGGGAAGATTTTCTCAACTTGGGGCTGAGCTGATGAAGACACTGAGGGACTTAA
GGCAGCCCAAGATAATTGTGTTCAGCACTGTCCCCTGCCCTCGCTGTGGCATCAGGGCCTCCTATGACCT
GGAGCCCAGTCACTGTCTGTTGAATGCCTGCTGTCAGGGTGGATTTATTTAA

Translation (483 aa):
MSLQAPPRLLELAEQSLLRDRALAIPTLEELPRELFPPLFMEAFTRRCCETLTTMVQAWPFTCLPLGSLM
KSCNLEIFRAVLEGLDALLAQKVRPRRWKLQVLDLRNVDENFWGIWSGASALSPEALSKRRTAGNCPRPG
GQQPLMVILDLCFKNGTLDECLTHFLEWGKQRKGLLHVCCKELQIFGIAIHRIIEVLNTVELDCIQEVEV
CCPWELSILIRFAPYLGQMRNLRKLVLFNIHVSACIPLDRKEQFVIQFTSQFLKLDYFQKLYMHSVSFLE
GHLDQLLRCLQAPLETVVMTECLLSESDLKHLSWCPSIRQLKELDLRGITLTHFSPEPLSVLLEQAEATL
QTLDLEDCGIVDSQLSAILPALSRCSQLSTFSFCGNLISMAALENLLRHTVGLSKLSLELYPAPLESYDA
QGALCWGRFSQLGAELMKTLRDLRQPKIIVFSTVPCPRCGIRASYDLEPSHCLLNACCQGGFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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