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Report for CCDS41255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41255.1 Public Homo sapiens 1 PRAMEF10 24 110 108 CCDS HistoryNCBI Gene:343071Re-query CCDS DB by CCDS ID:41255.1Re-query CCDS DB by GeneID:343071See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235347.4 ENSP00000235347.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000235347.4Link to Ensembl Protein Viewer:ENSP00000235347.4Re-query CCDS DB by Nucleotide ID:ENST00000235347Re-query CCDS DB by Protein ID:ENSP00000235347
Original member Current member NCBI NM_001039361.4 NP_001034450.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039361.4Link to Protein Sequence:NP_001034450.3Re-query CCDS DB by Nucleotide ID:NM_001039361Re-query CCDS DB by Protein ID:NP_001034450Link to BLAST:NP_001034450.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034450.3 474 O60809 474 100% 0 0

Chromosomal Locations for CCDS 41255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12892916 12893474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12894586 12895164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12895561 12895847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGAGCCTCCAGGCCCCATCCAGACTGCTGGAGCTGGCAGGGCAGAGCCTGCTGAGGAACCAGTTCTTGA
CC
ATCTTCACCCTGGATGAGCTGCCCAGGGAGGTCTTCCCTCTGATGTTCATGGAGGCCTTCAGCATGAG
A
CGTTTTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCTCCGCCTCCCTCTGGGATCCCTGATG
AAG
ACACCTCATCTGGAGACCTTGCAAGCTGTCCTGAGGGGACTTGATACACTGGTGGCCCAGAAGGTTC
GC
CCCAGGAGGTGGAAACTTCAAGTGCTGGATTTGAGGGATGTTGATGAGAATTTCTGGACCATATGGTC
T
GGAGCCAGGGTCCTCTCCTGCTCCCCAGAGGCCATGAGTAAGAGGCAGACAGTGGAGGACTGTCCAAGG
ATG
GGAGAGCGCCAGCCCTTGAAGGTGTTCATAGACCTCTGCCTAAAGGAAAGTACACTGGATGAATGCC
TG
AGCTACCTTTTTGGGTGGATCCACTACAGAAGAGGCCTAGTGCACCTGTGTTGTAGTAAGGTGCAGAA
T
TACTCAATGCCCACTTCAAGTTTCAGAAATCTATTGGAAAGGATATACCCAGACAGTATCCAGGAGTTG
GAA
GTCTGGAAAAAGTGCTCTCTCAATAAAACGGGAAAGTTTGCCCCTTACCTGAGCCAGATGAGCAATC
TT
CGTGAACTCTTTTTAGCCTTCGGTTATGAGCGTGAGTTGTACGTGAGCGTCCAGTGGCCGTGCATTCC
T
GACTTGGACTCTCCATTCCTCTGCCTGTACTACCCCCAGATGCTTTATATAAAAAAGATCAGTAATATC
AAA
GAGCACCTGGAGCACCTGCTCAGGTACCTCAAGAACCCCTTGGGGGCCTTTATATTCAGTGATGCTT
AC
CTAACTGATCGGGACATGGAGTGTCTGTCTCAGTACCCAAGCCTCAGTCAGCTAAAGGAGCTGCGTCT
G
ATTCATATCCTAATGTGGACCACCAATCTTGAGCCCCTTGGAGTTCTGCTGGAGAAAGTTGCTGCTACT
CTC
AAGACCCTCGTCTTAAAGGACTGTCGGATCCAGGACCCCCAACTCAGGGTCCTCCTGCCTGCCCTGA
GC
CACTGTTCCCAGCTCACCACCTTCAACTTTCATGGAAATGAGACCTCCATGAATGCTCTGAAAGACCT
G
CTGCGTCACACACGTGGGCTGAGCAAGTTAGGCCTGGAGTTGTATCCTGCCCCTCTGGAGAGTCTTGAC
TAC
AAGGGTCATGTCAATTGGGAGATCCTCACCCCAATTCGGGCTGAGCTGATGCGTACACTCAGGGAAG
TC
AGGCAGCCCAAGAGGATCTTCTTTGGTCCCGTCCCTTGCCCTAACTGTGGCTCATGGCCATCTGAGAA
A
GTGGACTTCCATCTTTGCTCCTAG


Translation (474 aa):
MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLM
K
TPHLETLQAVLRGLDTLVAQKVRP
RRWKLQVLDLRDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPR
M
GERQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQEL
E
VWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNI
K
EHLEHLL
RYLKNPLGAFIFSDAYLTDRDMECLSQYPSLSQLKELRLIHILMWTTNLEPLGVLLEKVAAT
L
KTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLD
Y
KGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPNCGSWPSEKVDFHLCS




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 Genome Browser Links:   Ensembl Genome Browser
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