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Report for CCDS41397.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41397.1 Public Homo sapiens 1 RPTN 24 110 108 CCDS HistoryNCBI Gene:126638Re-query CCDS DB by CCDS ID:41397.1Re-query CCDS DB by GeneID:126638See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41397.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316073.3 ENSP00000317895.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316073.3Link to Ensembl Protein Viewer:ENSP00000317895.3Re-query CCDS DB by Nucleotide ID:ENST00000316073Re-query CCDS DB by Protein ID:ENSP00000317895
Original member Current member NCBI NM_001122965.1 NP_001116437.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001122965.1Link to Protein Sequence:NP_001116437.1Re-query CCDS DB by Nucleotide ID:NM_001122965Re-query CCDS DB by Protein ID:NP_001116437Link to BLAST:NP_001116437.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116437.1 784 Q6XPR3 784 100% 0 0

Chromosomal Locations for CCDS 41397.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152154744 152156960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152157752 152157889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2355 nt):
ATGGCTCAACTCCTGAATAGCATACTCAGTGTGATTGACGTATTCCACAAATATGCCAAAGGGAATGGGG
ACTGTGCCTTACTATGCAAGGAAGAGTTGAAACAACTGCTCTTGGCTGAGTTTGGAGACATCCTCCAGAG
ACCAAATGACCCAGAGACTGTGGAAACCATCTTGAACCTCTTAGATCAAGACCGAGATGGACATATTGAT
TTTCATGAGTACCTCTTGTTGGTGTTCCAGTTGGTCCAAGCCTGCTATCATAAGCTAGACAATAAGTCAC
ATGGAGGCAGGACCTCACAGCAAGAAAGGGGGCAGGAAGGAGCACAAGACTGTAAGTTCCCAGGAAACAC
AGGCAGACAACACAGACAGAGGCACGAGGAAGAAAGGCAGAACTCCCACCACAGTCAGCCTGAGAGACAA
GACGGAGATTCCCACCATGGTCAGCCTGAGAGACAAGACAGAGATTCCCACCATGGTCAGTCTGAGAAAC
AAGACAGAGATTCCCACCACAGTCAGCCTGAGAGACAAGACAGAGATTCTCACCACAATCAGTCTGAGAG
ACAAGACAAGGATTTCAGCTTTGATCAGTCAGAGAGACAAAGTCAAGACTCCAGCTCTGGTAAAAAAGTG
AGTCACAAATCTACCAGTGGCCAGGCTAAATGGCAGGGACATATCTTTGCCTTAAATCGGTGTGAAAAAC
CAATTCAGGATTCTCATTATGGTCAGTCTGAAAGACATACACAACAATCTGAAACACTTGGACAAGCCTC
TCACTTTAACCAGACAAATCAACAGAAATCAGGCTCTTATTGTGGACAGTCTGAGAGGCTAGGTCAGGAA
TTAGGCTGTGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTACGGTCAGACGGACAGACAAGACCAGA
GTTATCATTATGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTACAGTCAGACGGACAGACAAGGCCA
GAGTTCCCACTACAGTCAGCCAGACAGACAAGGTCAGAGTTCCCACTATGGTCAAATGGACAGAAAAGGC
CAGTGTTATCATTATGATCAGACAAACAGACAAGGCCAGGGTTCCCACTACAGTCAACCAAACAGACAAG
GTCAGAGTTCCCACTATGGTCAGCCAGACACACAAGATCAGAGTTCTCACTATGGTCAGACAGACAGACA
AGACCAAAGTTCTCACTATGGTCAGACAGAGAGACAAGGCCAGAGTTCCCACTACAGTCAGATGGACCGA
CAAGGCCAGGGTTCTCACTACGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTATGGTCAGCCAGACA
GACAAGGCCAGAATTCCCACTATGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTATGGTCAGACAGA
CAGACAAGGCCAGAGTTCCCACTACAGTCAGCCAGACAAACAAGGCCAGAGTTCCCACTATGGTAAGATA
GACAGACAAGACCAGAGTTATCATTATGGTCAGCCAGACGGACAAGGCCAAAGTTCCCACTATGGTCAGA
CAGACAGACAAGGCCAGAGTTTCCACTATGGTCAGCCAGACAGACAAGGCCAGAGTTCCCACTACAGTCA
GATGGACAGACAAGGCCAGAGTTCCCACTATGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTACGGT
CAGACAGACAGACAAGGCCAGAGCTATCATTATGGTCAGACAGACAGACAAGGCCAGAGTTCCCACTATA
TTCAATCACAGACTGGGGAAATACAAGGGCAAAATAAGTACTTCCAAGGGACTGAAGGAACAAGAAAAGC
CTCTTATGTTGAACAATCAGGAAGATCAGGGAGGCTAAGTCAACAGACTCCAGGACAGGAAGGGTACCAA
AACCAGGGACAGGGATTCCAGTCTAGGGACTCACAGCAGAACGGCCACCAGGTATGGGAGCCTGAAGAGG
ATAGCCAACATCACCAACACAAACTCTTAGCACAAATCCAACAAGAAAGACCACTTTGTCACAAAGGGAG
AGACTGGCAATCATGCAGTAGTGAGCAGGGCCACAGACAGGCCCAGACCAGGCAGAGTCATGGTGAGGGG
CTGAGCCACTGGGCAGAGGAAGAGCAGGGCCATCAAACTTGGGATAGACACAGCCATGAGAGTCAGGAAG
GTCCATGTGGGACACAGGACAGGCGAACCCATAAAGATGAGCAGAACCATCAGAGACGAGACAGACAAAC
CCATGAACATGAGCAGAGCCATCAGAGACGAGACAGGCAAACCCATGAAGACAAGCAGAACCGTCAGAGA
CGAGACAGGCAAACCCATGAAGACGAGCAGAACCATCAGAGATGA

Translation (784 aa):
MAQLLNSILSVIDVFHKYAKGNGDCALLCKEELKQLLLAEFGDILQRPNDPETVETILNLLDQDRDGHID
FHEYLLLVFQLVQACYHKLDNKSHGGRTSQQERGQEGAQDCKFPGNTGRQHRQRHEEERQNSHHSQPERQ
DGDSHHGQPERQDRDSHHGQSEKQDRDSHHSQPERQDRDSHHNQSERQDKDFSFDQSERQSQDSSSGKKV
SHKSTSGQAKWQGHIFALNRCEKPIQDSHYGQSERHTQQSETLGQASHFNQTNQQKSGSYCGQSERLGQE
LGCGQTDRQGQSSHYGQTDRQDQSYHYGQTDRQGQSSHYSQTDRQGQSSHYSQPDRQGQSSHYGQMDRKG
QCYHYDQTNRQGQGSHYSQPNRQGQSSHYGQPDTQDQSSHYGQTDRQDQSSHYGQTERQGQSSHYSQMDR
QGQGSHYGQTDRQGQSSHYGQPDRQGQNSHYGQTDRQGQSSHYGQTDRQGQSSHYSQPDKQGQSSHYGKI
DRQDQSYHYGQPDGQGQSSHYGQTDRQGQSFHYGQPDRQGQSSHYSQMDRQGQSSHYGQTDRQGQSSHYG
QTDRQGQSYHYGQTDRQGQSSHYIQSQTGEIQGQNKYFQGTEGTRKASYVEQSGRSGRLSQQTPGQEGYQ
NQGQGFQSRDSQQNGHQVWEPEEDSQHHQHKLLAQIQQERPLCHKGRDWQSCSSEQGHRQAQTRQSHGEG
LSHWAEEEQGHQTWDRHSHESQEGPCGTQDRRTHKDEQNHQRRDRQTHEHEQSHQRRDRQTHEDKQNRQR
RDRQTHEDEQNHQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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