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Report for CCDS41473.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41473.1 Public Homo sapiens 1 SDE2 24 110 108 CCDS HistoryNCBI Gene:163859Re-query CCDS DB by CCDS ID:41473.1Re-query CCDS DB by GeneID:163859See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41473.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272091.8 ENSP00000272091.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272091.8Link to Ensembl Protein Viewer:ENSP00000272091.7Re-query CCDS DB by Nucleotide ID:ENST00000272091Re-query CCDS DB by Protein ID:ENSP00000272091
Original member Current member NCBI NM_152608.4 NP_689821.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152608.4Link to Protein Sequence:NP_689821.3Re-query CCDS DB by Nucleotide ID:NM_152608Re-query CCDS DB by Protein ID:NP_689821Link to BLAST:NP_689821.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689821.3 451 Q6IQ49-1 451 100% 0 0

Chromosomal Locations for CCDS 41473.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 225985302 225985523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225987896 225988388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225991243 225991363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225992398 225992567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225992891 225993002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225995266 225995383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 225999193 225999312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCGGAGGCCGCGGCGCTGGTGTGGATTCGCGGCCCTGGCTTCGGGTGCAAGGCGGTGCGGTGTGCCT
CGGGTCGGTGCACCGTCCGGGATTTTATCCACCGGCACTGCCAAGATCAGAATGTTCCAGTGGAAAACTT
CTTTGTGAAATGCAATGGAGCACTCATTAACACCAGTGACACAGTGCAGCATGGAGCTGTTTATAGTTTG
GAACCCAGACTTTGCGGTGGAAAAGGAGGTTTTGGATCTATGCTCCGAGCACTTGGTGCTCAGATTGAGA
AGACAACCAATCGAGAAGCTTGTCGGGATCTCAGTGGAAGGAGACTACGCGATGTCAATCATGAAAAAGC
AATGGCTGAATGGGTAAAACAACAAGCCGAGCGAGAGGCTGAAAAGGAGCAGAAGCGGCTGGAGCGACTG
CAGCGGAAGCTTGTAGAACCCAAGCACTGCTTCACCAGCCCCGACTACCAGCAGCAGTGCCATGAGATGG
CTGAGCGTCTGGAGGATTCCGTCCTCAAAGGTATGCAGGCTGCCTCCAGCAAGATGGTTTCAGCAGAAAT
CAGTGAGAATCGGAAACGGCAATGGCCTACTAAATCTCAAACAGACAGAGGAGCCAGTGCGGGAAAGAGG
AGATGCTTCTGGTTGGGCATGGAGGGACTAGAGACTGCAGAAGGGTCCAACTCTGAGAGTTCAGATGATG
ACAGTGAAGAAGCACCAAGCACTTCAGGAATGGGTTTCCATGCTCCAAAAATTGGTAGCAATGGTGTCGA
GATGGCAGCCAAATTTCCCAGTGGTTCTCAGAGGGCGAGAGTAGTGAATACAGACCATGGATCACCAGAA
CAACTGCAGATCCCGGTGACTGACTCTGGGAGGCATATTTTAGAAGACTCATGTGCTGAGCTGGGGGAGT
CCAAAGAGCACATGGAAAGCAGGATGGTTACAGAAACAGAAGAGACCCAGGAGAAGAAGGCAGAGAGTAA
AGAACCCATAGAAGAGGAGCCCACTGGGGCTGGACTGAATAAGGATAAAGAGACAGAAGAAAGGACTGAT
GGGGAAAGAGTTGCTGAGGTAGCACCTGAAGAAAGGGAAAACGTTGCCGTTGCCAAACTGCAGGAAAGCC
AGCCAGGAAACGCAGTTATTGATAAGGAAACTATAGATTTATTGGCGTTCACCTCTGTTGCAGAACTGGA
GTTGCTGGGTTTGGAGAAGCTCAAATGTGAACTGATGGCCCTTGGACTGAAATGTGGGGGCACTCTGCAG
GAGCGGGCAGCAAGACTCTTCTCTGTCAGAGGACTGGCAAAGGAGCAAATTGACCCGGCTTTATTTGCCA
AGCCTTTGAAAGGGAAGAAAAAATGA

Translation (451 aa):
MAEAAALVWIRGPGFGCKAVRCASGRCTVRDFIHRHCQDQNVPVENFFVKCNGALINTSDTVQHGAVYSL
EPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQKRLERL
QRKLVEPKHCFTSPDYQQQCHEMAERLEDSVLKGMQAASSKMVSAEISENRKRQWPTKSQTDRGASAGKR
RCFWLGMEGLETAEGSNSESSDDDSEEAPSTSGMGFHAPKIGSNGVEMAAKFPSGSQRARVVNTDHGSPE
QLQIPVTDSGRHILEDSCAELGESKEHMESRMVTETEETQEKKAESKEPIEEEPTGAGLNKDKETEERTD
GERVAEVAPEERENVAVAKLQESQPGNAVIDKETIDLLAFTSVAELELLGLEKLKCELMALGLKCGGTLQ
ERAARLFSVRGLAKEQIDPALFAKPLKGKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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